FastQCFastQC Report
Tue 27 Oct 2020
SRR4238355_subsamp.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4238355_subsamp.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2199
Sequences flagged as poor quality0
Sequence length27-51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGCTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAACG160.7276034561164165No Hit
GGCGGTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGACACC150.6821282401091405No Hit
GTTGGTTTTCAATCTTGACAATGATCTTGACGTCCTTACCTTGTTCACCC140.6366530241018644No Hit
GTCGTCACAAGCCTTAGCGTACTTGTCATCGGTGGTGAAGATCATTTCGTG130.5911778080945885No Hit
CTGGGTTGTTGGTCTTTGGACCGATGGTACCAATGATGGAGGTTCTTCTC130.5911778080945885No Hit
GTCCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGGC110.5002273760800363No Hit
CTTTTTTTAAACGGTAGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGC100.45475216007276037No Hit
GGACAATGTTCAAACCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGT90.4092769440654843No Hit
CTTTATATAAAATTTAAAAAATATAATTCAAAAAAATAATATCTTCATTC80.36380172805820826No Hit
GTGAAGATCATTTCGTGGTTTGGTGGGATTGGGTAGTCAACATCGTTGGTG80.36380172805820826No Hit
CTTCATTCAATCATGATTCTTTTTTTAAACGGTAGAGACTTGCAAAGTGTT80.36380172805820826No Hit
CTCTGGTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCAC80.36380172805820826No Hit
GTAGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGG80.36380172805820826No Hit
CTAGCAGCTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTG70.3183265120509322No Hit
CGTAGTTTGGCAAGTAAGCGATAGCTTGTTCAGCAATGACAGCGGTTTC70.3183265120509322No Hit
CCCTTTTCGACGGCGGAAACATTCAAAATACCGTTAGAGTCGACATCGAA70.3183265120509322No Hit
CAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCG70.3183265120509322No Hit
CGGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGT70.3183265120509322No Hit
GCCAAGACTTCTGGGGCTGGGATTTCAATACCCAAGTCACCTCTGGCAACC60.2728512960436562No Hit
CGGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAAA60.2728512960436562No Hit
GTCTTTATATAAAATTTAAAAAATATAATTCAAAAAAATAATATCTTCATT60.2728512960436562No Hit
CCGTTCTTGACACCGAATCTCAAATCTTCCTTGTCCTTTTCAGACAAAGCT60.2728512960436562No Hit
GTACAATTCTTCGGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTC60.2728512960436562No Hit
CCAAGACTTCTCTGATGGTCAAAACATCGTTGGCGGTTCTGATGAAAGA60.2728512960436562No Hit
CTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAACGAATG60.2728512960436562No Hit
CTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCACAGATAACTGGC60.2728512960436562No Hit
CTGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGTG60.2728512960436562No Hit
GTTGGTTATCAGCATAAGTGGAAAAGATCTCGGACTTCTTTGTTGGAATGG60.2728512960436562No Hit
CCCGGAATAAATTCAATTAATAAACACGATTCCTTATATAGTGGTTACAC60.2728512960436562No Hit
CACCGTTCTTGACACCGAATCTCAAATCTTCCTTGTCCTTTTCAGACAA60.2728512960436562No Hit
CTGGCAAATCGACATCGGTACCTGGTAAGTTGACACCCTTGTGGGAAC60.2728512960436562No Hit
TCCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGGCG60.2728512960436562No Hit
CTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATGGAA50.22737608003638018No Hit
GTCCAGTCAGAGACAGGTTCCTTTTCGAAAACGAATGGGAAGACACCTCTG50.22737608003638018No Hit
CCTTGGTGTCCAAAGCAATGGCCAATGGTCTACCTGGGTACAATTCTTCGG50.22737608003638018No Hit
GTCAGCTTCTTCATCGTCGGAACCGAATAAATCGACATCGTCATCTTCTTC50.22737608003638018No Hit
CCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGGCGG50.22737608003638018No Hit
GTCACCCTTCTTCAAGATACCGAATTCCTTAGCCTTTTCAATACCGAAGTT50.22737608003638018No Hit
GTCGAAGTTGTTAACACCTTGTTGGTTTTCAATCTTGACAATGATCTTGAC50.22737608003638018No Hit
CCGGAAGTGGACAAGACAATGATAGCCTTGGCCTTTTGTTCGAAAACAGC50.22737608003638018No Hit
CCGGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAA50.22737608003638018No Hit
CTTTGGAGTACAGTTTCTCATGTCATCGTAGTTTGGCAAGTAAGCGATAGC50.22737608003638018No Hit
AGCGGAGATGACCTTGGTGATGTTCTTGTAGTCAACGTACATGATCTTGTC50.22737608003638018No Hit
GGATTGGGTAGTCAACATCGTTGGTGGTGGTACCAGTTCTGATTTCTGGAC50.22737608003638018No Hit
GCCTTTTATAATTTTTGCATAGCAGCAATATCGGTAGATTGGACGTGGTCT50.22737608003638018No Hit
CTTGTAGTCAACGTACATGATCTTGTCGTCACAAGCCTTAGCGTACTTGTC50.22737608003638018No Hit
GTGGAGGTTGGCTTTGGAGTACAGTTTCTCATGTCATCGTAGTTTGGCA50.22737608003638018No Hit
GTCTACCTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAATGACAGACT50.22737608003638018No Hit
GTCCAAAGTAGATCTGAACAAGTCAGCACACAATTCTTCGAATCTGGCTCT50.22737608003638018No Hit
GTCAAAACATCGTTGGCGGTTCTGATGAAAGAAGCGAAGACCATGTGGAC50.22737608003638018No Hit
GGTAGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTG40.18190086402910413No Hit
GTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCACAGAT40.18190086402910413No Hit
CCTTGGTGATGTTCTTGTAGTCAACGTACATGATCTTGTCGTCACAAGCCT40.18190086402910413No Hit
GTTCTTGACACCGAATCTCAAATCTTCCTTGTCCTTTTCAGACAAAGCTGG40.18190086402910413No Hit
GCCTTTTCAATACCGAAGTTGATACGGGCTTCAACATCATCAGTCCAGTC40.18190086402910413No Hit
CCAATGGTCTACCTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAATG40.18190086402910413No Hit
CTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCGATGGT40.18190086402910413No Hit
CTGGCTCTGGTGATGGAAGTGTAGAAATCGATACCTTCGAACAAAGAGTC40.18190086402910413No Hit
AGCAGCGACAGCGGAGGCAGCGACGGTTTCGGTGGTGGAGGTTGGCTTTGG40.18190086402910413No Hit
CCAGTTCTGATTTCTGGACCCTTGGTGTCCAAAGCAATGGCCAATGGTCT40.18190086402910413No Hit
GGGTGGTACCGGAAGTGGACAAGACAATGATAGCCTTGGCCTTTTGTTCG40.18190086402910413No Hit
GTCAGAGACAGGTTCCTTTTCGAAAACGAATGGGAAGACACCTCTGTACA40.18190086402910413No Hit
CCCAGGTCAAACCTTCCATTTCGATGGCCTTGACGTTAGCAACCATTTCTT40.18190086402910413No Hit
GGGATTGGGTAGTCAACATCGTTGGTGGTGGTACCAGTTCTGATTTCTGG40.18190086402910413No Hit
GTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATGGAAACGTAAGTGTC40.18190086402910413No Hit
CTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAATGACAGACTTGTGGT40.18190086402910413No Hit
AGAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGAT40.18190086402910413No Hit
CGTTGATTGGGTAGTTACCCTTGGCGGTTTCACCAGACAACATAACACAGT40.18190086402910413No Hit
TTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCACAGATAACTGGCT40.18190086402910413No Hit
GCGGAGATGACCTTGGTGATGTTCTTGTAGTCAACGTACATGATCTTGTCG40.18190086402910413No Hit
GTTCGAAAACAGCAGCGACAGCGGAGGCAGCGACGGTTTCGGTGGTGGAGG40.18190086402910413No Hit
CTTCTTCAAGATACCGAATTCCTTAGCCTTTTCAATACCGAAGTTGATACG40.18190086402910413No Hit
GACAGTTTGGTCTGTACTTGGAAACCAATCTTGGGGTGGTACCGGAAGTGG40.18190086402910413No Hit
CAAGACTTCTGGGGCTGGGATTTCAATACCCAAGTCACCTCTGGCAACCAT40.18190086402910413No Hit
AGCTCTGGTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGC40.18190086402910413No Hit
GTTGTTGGTCTTTGGACCGATGGTACCAATGATGGAGGTTCTTCTCAAGTC40.18190086402910413No Hit
CTCTTTCACAAGCGGTTCTTAATCTTCTCAAAGCTCTTTGGTTGGTAGAC40.18190086402910413No Hit
CTCATGTCATCGTAGTTTGGCAAGTAAGCGATAGCTTGTTCAGCAATGAC40.18190086402910413No Hit
AACAGATCTTACCGGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCA30.1364256480218281No Hit
GGTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCAC30.1364256480218281No Hit
AGCGGTTTCAGCCATAGTGGTAACGGCGTTGATTGGGTAGTTACCCTTGGC30.1364256480218281No Hit
CGTCCTTACCTTGTTCACCCAAGACTTCTCTGATGGTCAAAACATCGTTGG30.1364256480218281No Hit
GGCGTTGATTGGGTAGTTACCCTTGGCGGTTTCACCAGACAACATAACAC30.1364256480218281No Hit
CTGTACTTGGAAACCAATCTTGGGGTGGTACCGGAAGTGGACAAGACAATG30.1364256480218281No Hit
GTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGTGAGAGAAGTTCAT30.1364256480218281No Hit
TGATGTTCTTGTAGTCAACGTACATGATCTTGTCGTCACAAGCCTTAGCGT30.1364256480218281No Hit
CTCAAATCTTCCTTGTCCTTTTCAGACAAAGCTGGCAAATCGACATCGGT30.1364256480218281No Hit
GGACAGTTTGGTCTGTACTTGGAAACCAATCTTGGGGTGGTACCGGAAGTG30.1364256480218281No Hit
GTCGGAACCGAATAAATCGACATCGTCATCTTCTTCTTCTTCGGCAGCGGC30.1364256480218281No Hit
GCGGTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGACACCG30.1364256480218281No Hit
CTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGTACTTGGA30.1364256480218281No Hit
GGAAGACACCTCTGTACAAGTGAGAGAATCTAGCAGCTCTTGGGCATCTGG30.1364256480218281No Hit
ATTTAAGTAACTTATAAATCTTTATTTGAGTTGAAAAGAAAAACCATGTCT30.1364256480218281No Hit
TTCGGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAACC30.1364256480218281No Hit
TGACCTTGGTGATGTTCTTGTAGTCAACGTACATGATCTTGTCGTCACA30.1364256480218281No Hit
GACAGACTTGTGGTATTCGTAAGAACCGTGAGAGAAGTTCATACGGACAAT30.1364256480218281No Hit
GACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATGG30.1364256480218281No Hit
CCTTAGTCTTGGCTCTTTCACCTTCAAAGACTTGAATCAAGACACCTGGTT30.1364256480218281No Hit
TGGAAACCAATCTTGGGGTGGTACCGGAAGTGGACAAGACAATGATAGCCT30.1364256480218281No Hit
CCGAATCTCAAATCTTCCTTGTCCTTTTCAGACAAAGCTGGCAAATCGAC30.1364256480218281No Hit
AGAGAATCTAGCAGCTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTT30.1364256480218281No Hit
GTTGGCGGTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGAC30.1364256480218281No Hit
GGCAAATCGACATCGGTACCTGGTAAGTTGACACCCTTGTGGGAAC30.1364256480218281No Hit
GGGTAGTTACCCTTGGCGGTTTCACCAGACAACATAACACAGTCAGCACC30.1364256480218281No Hit
TGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGTGAC30.1364256480218281No Hit
CGTACTTGTCATCGGTGGTGAAGATCATTTCGTGGTTTGGTGGGATTGGGT30.1364256480218281No Hit
GTGGGAACAGATCTTACCGGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTC30.1364256480218281No Hit
GTACAAGTGAGAGAATCTAGCAGCTCTTGGGCATCTGGTAACCAAGATGAT30.1364256480218281No Hit
GGCGTTCAAAGCCTTGACCTTCAAAGTCTTGTCGTCAACGACTTCCAAAAC30.1364256480218281No Hit
GTACAGTTTCTCATGTCATCGTAGTTTGGCAAGTAAGCGATAGCTTGTTC30.1364256480218281No Hit
CTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGTACTTGG30.1364256480218281No Hit
GTCATCGTAGTTTGGCAAGTAAGCGATAGCTTGTTCAGCAATGACAGCGGT30.1364256480218281No Hit
ACGGGCTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAAC30.1364256480218281No Hit
CTGGTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGCAC30.1364256480218281No Hit
GGCTGGGATTTCAATACCCAAGTCACCTCTGGCAACCATAACACCGTCAGT30.1364256480218281No Hit
GGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGTACTTGGAAACC30.1364256480218281No Hit
GCGTACTTGTCATCGGTGGTGAAGATCATTTCGTGGTTTGGTGGGATTGGG30.1364256480218281No Hit
GTTCTGATGAAAGAAGCGAAGACCATGTGGACACCGTTCTTGACACCGAAT30.1364256480218281No Hit
CCTCTGTACAAGTGAGAGAATCTAGCAGCTCTTGGGCATCTGGTAACCA30.1364256480218281No Hit
GGCGGTTTCACCAGACAACATAACACAGTCAGCACCATCCAAGATAGCGTT30.1364256480218281No Hit
CGGAAACTTCAGCTCTGGTTGGTCTTGGGTTGTAAGTCATGGATTCCAAC30.1364256480218281No Hit
CACCGTCAGTGACCTTCAAGATTTCGTCGAAGTTGTTAACACCTTGTTGGT30.1364256480218281No Hit
GTGATGTTCTTGTAGTCAACGTACATGATCTTGTCGTCACAAGCCTTAGCG30.1364256480218281No Hit
TCTTTATATAAAATTTAAAAAATATAATTCAAAAAAATAATATCTTCATTC30.1364256480218281No Hit
CTCTGGTGATGGAAGTGTAGAAATCGATACCTTCGAACAAAGAGTCAATTT30.1364256480218281No Hit
GAGACTTGCAAAGTGTTGGAGTGACCAGCACCGGCCTTGAAACCTTGGATG30.1364256480218281No Hit
GGCCAATGGTCTACCTGGGTACAATTCTTCGGACTTTCTGGCGTTGTCAAT30.1364256480218281No Hit
CCAGCCTTTCTCAAAGCAACCAAGGTTTCTGGGTTGTTGGTCTTTGGACCG30.1364256480218281No Hit
GCTCTGGTTGGTCTTGGGTTGTAAGTCATGGATTCCAACATTTGGGTAGC30.1364256480218281No Hit
CCCAAGACTTCTCTGATGGTCAAAACATCGTTGGCGGTTCTGATGAAAGA30.1364256480218281No Hit
GTCGAATTCATCGGCCTTGGAAGCGATGTGGTTGAACCATCTGGAGAATTC30.1364256480218281No Hit
CAACAAGTTGTTGTCCTTAGTCTTGGCTCTTTCACCTTCAAAGACTTGAAT30.1364256480218281No Hit
CTGGTAAGTTGACACCCTTGTGGGAACAGATCTTACCGGCGTTCAAAGCCT30.1364256480218281No Hit
GGCTTCAACATCATCAGTCCAGTCAGAGACAGGTTCCTTTTCGAAAACGA30.1364256480218281No Hit
CTTGGATGGAAACGTAAGTGTCACCCTTCTTCAAGATACCGAATTCCTT30.1364256480218281No Hit
GCTTGTTCCAATTTGTCACCAGCTTCAGAAATGGTGTTCTTCAAAGAGTA30.1364256480218281No Hit
CCTTCTTGTCCAAACCGTAAGCAATGGCAGCGGCGGTAGGTTCGTTAATA30.1364256480218281No Hit
AGCAGCTCTTGGGCATCTGGTAACCAAGATGATTGGACAGTTTGGTCTGT30.1364256480218281No Hit
GGACTTTCTGGCGTTGTCAATGACAGACTTGTGGTATTCGTAAGAACCGTG30.1364256480218281No Hit

[OK]Adapter Content

Adapter graph