#id: DupRadar #section_name: 'DupRadar' #section_href: 'bioconductor.org/packages/release/bioc/html/dupRadar.html' #description: "provides duplication rate quality control for RNA-Seq datasets. Highly expressed genes can be expected to have a lot of duplicate reads, but high numbers of duplicates at low read counts can indicate low library complexity with technical duplication. # This plot shows the general linear models - a summary of the gene duplication distributions. " #pconfig: # title: 'DupRadar General Linear Model' # xLog: True # xlab: 'expression (reads/kbp)' # ylab: '% duplicate reads' # ymax: 100 # ymin: 0 # tt_label: '{point.x:.1f} reads/kbp: {point.y:,.2f}% duplicates' # xPlotLines: # - color: 'green' # dashStyle: 'LongDash' # label: # style: {color: 'green'} # text: '0.5 RPKM' # verticalAlign: 'bottom' # y: -65 # value: 0.5 # width: 1 # - color: 'red' # dashStyle: 'LongDash' # label: # style: {color: 'red'} # text: '1 read/bp' # verticalAlign: 'bottom' # y: -65 # value: 1000 # width: 1 0.466853408029879 0.0715970487624465 0.938967136150235 0.156183227085723 1.55945419103314 0.274987219050622 2.41545893719807 0.44761275056379 3.7513397642015 0.729973612678532 8.47457627118644 1.79521427803078 15.7894736842105 3.53460515473076