#id: DupRadar #section_name: 'DupRadar' #section_href: 'bioconductor.org/packages/release/bioc/html/dupRadar.html' #description: "provides duplication rate quality control for RNA-Seq datasets. Highly expressed genes can be expected to have a lot of duplicate reads, but high numbers of duplicates at low read counts can indicate low library complexity with technical duplication. # This plot shows the general linear models - a summary of the gene duplication distributions. " #pconfig: # title: 'DupRadar General Linear Model' # xLog: True # xlab: 'expression (reads/kbp)' # ylab: '% duplicate reads' # ymax: 100 # ymin: 0 # tt_label: '{point.x:.1f} reads/kbp: {point.y:,.2f}% duplicates' # xPlotLines: # - color: 'green' # dashStyle: 'LongDash' # label: # style: {color: 'green'} # text: '0.5 RPKM' # verticalAlign: 'bottom' # y: -65 # value: 0.5 # width: 1 # - color: 'red' # dashStyle: 'LongDash' # label: # style: {color: 'red'} # text: '1 read/bp' # verticalAlign: 'bottom' # y: -65 # value: 1000 # width: 1 0.287108814240597 0.199008072241521 0.805152979066023 0.460988007449023 1.85185185185185 0.906440832938338 3.83141762452107 1.62998965624301 5.60224089635854 2.21030516052984 9.958071278826 3.49038211768526 31.4875135722041 8.47970993138251