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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-06-15, 14:28 based on data in:

        General Statistics

        Showing 25/25 rows and 6/8 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups% Aligned
        16C_26psu_1_S13_R1_001_val_1
        76.7%
        0.7%
        1.2%
        313.6
        15.3%
        38.7%
        16C_26psu_1_S13_R2_001_val_2
        46.7%
        16C_26psu_2_S14_R1_001_val_1
        77.6%
        0.7%
        1.5%
        237.0
        22.1%
        39.7%
        16C_26psu_3_S15_R1_001_val_1
        78.1%
        0.8%
        2.9%
        172.9
        34.2%
        39.6%
        16C_26psu_4_S16_R1_001_val_1
        77.8%
        0.7%
        1.6%
        235.5
        16.9%
        39.5%
        16C_32psu_1_S1_R1_001_val_1
        77.6%
        0.7%
        1.4%
        250.5
        18.2%
        39.8%
        16C_32psu_2_S2_R1_001_val_1
        76.6%
        0.7%
        1.7%
        239.9
        22.1%
        43.7%
        16C_32psu_3_S3_R1_001_val_1
        77.1%
        0.7%
        1.6%
        183.1
        14.2%
        41.5%
        16C_32psu_4_S4_R1_001_val_1
        77.0%
        0.7%
        1.1%
        241.9
        22.6%
        40.1%
        16C_32psu_4_S4_R2_001_val_2
        49.7%
        8C_26psu_1_S9_R1_001_val_1
        77.7%
        0.8%
        1.4%
        267.0
        15.7%
        39.2%
        8C_26psu_2_S10_R1_001_val_1
        77.2%
        0.7%
        1.3%
        263.2
        21.3%
        42.6%
        8C_26psu_2_S10_R2_001_val_2
        49.9%
        8C_26psu_3_S11_R1_001_val_1
        78.0%
        0.7%
        1.5%
        209.0
        19.5%
        41.0%
        8C_26psu_4_S12_R1_001_val_1
        76.4%
        0.8%
        2.1%
        141.2
        44.3%
        39.9%
        8C_32psu_1_S5_R1_001_val_1
        77.4%
        0.7%
        1.6%
        159.5
        15.5%
        40.2%
        8C_32psu_2_S6_R1_001_val_1
        76.7%
        0.7%
        1.3%
        186.1
        13.6%
        40.3%
        8C_32psu_3_S7_R1_001_val_1
        76.5%
        0.7%
        1.4%
        188.8
        15.0%
        40.3%
        8C_32psu_3_S7_R2_001_val_2
        47.1%
        8C_32psu_4_S8_R1_001_val_1
        75.6%
        0.7%
        1.0%
        216.2
        18.4%
        38.6%
        CTRL_16C_26psu_1_S19_R1_001_val_1
        78.1%
        0.7%
        1.3%
        237.4
        19.1%
        37.1%
        CTRL_16C_26psu_2_S21_R1_001_val_1
        78.8%
        0.9%
        1.5%
        153.5
        15.2%
        37.2%
        CTRL_8C_26psu_1_S17_R1_001_val_1
        77.3%
        0.7%
        1.2%
        195.8
        26.0%
        42.6%
        CTRL_8C_26psu_1_S17_R2_001_val_2
        50.9%
        CTRL_8C_26psu_2_S18_R1_001_val_1
        78.7%
        0.8%
        2.1%
        175.2
        22.3%
        39.8%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Alignment Rates

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        Deduplication

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        Strand Alignment

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        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.