[2020-06-15 14:28:32,072] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2020-06-15 14:28:32,073] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/strigg/.multiqc_config.yaml [2020-06-15 14:28:32,073] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-06-15 14:28:32,073] multiqc [DEBUG ] Command used: /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc /gscratch/scrubbed/strigg/analyses/20200612/ /gscratch/scrubbed/strigg/analyses/20200613/ [2020-06-15 14:28:37,355] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2020-06-15 14:28:37,356] multiqc [INFO ] This is MultiQC v1.8 [2020-06-15 14:28:37,357] multiqc [DEBUG ] Command : /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc /gscratch/scrubbed/strigg/analyses/20200612/ /gscratch/scrubbed/strigg/analyses/20200613/ [2020-06-15 14:28:37,357] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/strigg/analyses/20200613 [2020-06-15 14:28:37,357] multiqc [INFO ] Template : default [2020-06-15 14:28:37,357] multiqc [DEBUG ] Running Python 3.7.6 | packaged by conda-forge | (default, Mar 5 2020, 15:27:18) [GCC 7.3.0] [2020-06-15 14:28:37,357] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200612 [2020-06-15 14:28:37,357] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200613 [2020-06-15 14:28:37,358] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-06-15 14:28:37,358] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmplmha8hsc [2020-06-15 14:28:38,035] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1.fq.gz [2020-06-15 14:28:38,036] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1.fq.gz [2020-06-15 14:28:38,052] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_R1_001_val_1.fq.gz [2020-06-15 14:28:38,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_R1_001_val_1.fq.gz [2020-06-15 14:28:38,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_R1_001_val_1.fq.gz [2020-06-15 14:28:38,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_R2_001_val_2.fq.gz [2020-06-15 14:28:38,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2706798.out [2020-06-15 14:28:38,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2706798.out [2020-06-15 14:28:38,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1.fq.gz [2020-06-15 14:28:38,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_R1_001_val_1.fq.gz [2020-06-15 14:28:38,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_R1_001_val_1.fq.gz [2020-06-15 14:28:38,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_R1_001_val_1.fq.gz [2020-06-15 14:28:38,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_R2_001_val_2.fq.gz [2020-06-15 14:28:38,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_R2_001_val_2.fq.gz [2020-06-15 14:28:38,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_R1_001_val_1.fq.gz [2020-06-15 14:28:38,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_R2_001_val_2.fq.gz [2020-06-15 14:28:38,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R2_001_val_2.fq.gz [2020-06-15 14:28:38,305] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_R2_001_val_2.fq.gz [2020-06-15 14:28:38,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R2_001_val_2.fq.gz [2020-06-15 14:28:38,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_R1_001_val_1.fq.gz [2020-06-15 14:28:38,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2706898.out [2020-06-15 14:28:38,332] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2706898.out [2020-06-15 14:28:38,547] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R2_001_val_2.fq.gz [2020-06-15 14:28:38,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1.fq.gz [2020-06-15 14:28:38,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_R2_001_val_2.fq.gz [2020-06-15 14:28:38,548] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1.fq.gz [2020-06-15 14:28:38,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_R2_001_val_2.fq.gz [2020-06-15 14:28:38,549] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_R1_001_val_1.fq.gz [2020-06-15 14:28:38,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_R2_001_val_2.fq.gz [2020-06-15 14:28:38,550] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_R1_001_val_1.fq.gz [2020-06-15 14:28:38,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_R2_001_val_2.fq.gz [2020-06-15 14:28:38,551] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_R1_001_val_1.fq.gz [2020-06-15 14:28:38,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_R2_001_val_2.fq.gz [2020-06-15 14:28:38,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_R2_001_val_2.fq.gz [2020-06-15 14:28:38,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_R1_001_val_1.fq.gz [2020-06-15 14:28:38,552] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_R2_001_val_2.fq.gz [2020-06-15 14:28:38,553] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_R1_001_val_1.fq.gz [2020-06-15 14:28:38,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_R2_001_val_2.fq.gz [2020-06-15 14:28:38,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_R2_001_val_2.fq.gz [2020-06-15 14:28:38,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R2_001_val_2.fq.gz [2020-06-15 14:28:38,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_R1_001_val_1.fq.gz [2020-06-15 14:28:38,554] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_R1_001_val_1.fq.gz [2020-06-15 14:28:38,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2706792.out [2020-06-15 14:28:38,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R2_001_val_2.fq.gz [2020-06-15 14:28:38,582] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_R2_001_val_2.fq.gz [2020-06-15 14:28:38,595] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,603] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,634] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,635] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,637] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,638] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,644] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,645] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,647] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,648] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,649] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,650] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,651] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,652] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,684] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,702] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,717] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,747] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,750] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,757] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,760] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,760] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,762] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,763] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,782] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,838] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,839] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,840] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,843] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,844] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,860] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,862] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,863] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,864] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,865] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,866] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,867] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,869] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,870] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,871] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,872] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,873] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,874] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,875] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,898] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,899] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,901] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,903] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,904] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L002_R2_001_val_2.fq.gz [2020-06-15 14:28:38,906] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,907] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L001_R2_001_val_2.fq.gz [2020-06-15 14:28:38,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1.fq.gz [2020-06-15 14:28:38,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L002_R1_001_val_1.fq.gz [2020-06-15 14:28:38,920] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,921] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,924] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,926] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,931] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,933] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,947] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,948] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,950] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,951] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,953] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,961] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,977] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,979] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,980] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,981] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,985] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,986] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,987] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,989] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:38,992] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:38,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:38,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,010] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,019] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,037] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,038] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,040] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,041] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,046] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,047] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,048] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,050] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,052] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,054] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,061] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,070] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,071] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,073] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,074] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,079] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,080] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,081] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,082] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,083] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,084] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,085] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2.bam [2020-06-15 14:28:39,086] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R2_001_val_2_bismark_bt2.bam [2020-06-15 14:28:39,119] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,141] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,142] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,143] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,168] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,176] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,216] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,217] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,221] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,222] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,242] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,244] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,246] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,247] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,249] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,252] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,253] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,254] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,255] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,261] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,263] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,265] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2708939.out [2020-06-15 14:28:39,315] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2708939.out [2020-06-15 14:28:39,315] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: slurm-2708939.out [2020-06-15 14:28:39,315] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: slurm-2708939.out [2020-06-15 14:28:39,316] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: slurm-2708939.out [2020-06-15 14:28:39,316] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: slurm-2708939.out [2020-06-15 14:28:39,701] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,703] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,712] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,714] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,716] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,721] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,722] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,725] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,726] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,727] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,730] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,731] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,732] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,734] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,737] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,740] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,748] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,749] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,753] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,754] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,756] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-06-15 14:28:39,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-06-15 14:28:39,759] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_R1_001_val_1_bismark_bt2_pe.bam [2020-06-15 14:28:39,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:39,761] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-06-15 14:28:43,790] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.5 [2020-06-15 14:28:43,812] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.5 [2020-06-15 14:28:43,862] multiqc [DEBUG ] No samples found: custom_content [2020-06-15 14:28:43,992] multiqc [DEBUG ] No samples found: conpair [2020-06-15 14:28:44,071] multiqc [DEBUG ] No samples found: peddy [2020-06-15 14:28:44,182] multiqc [DEBUG ] No samples found: methylQA [2020-06-15 14:28:44,228] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-06-15 14:28:44,312] multiqc [DEBUG ] No samples found: qualimap [2020-06-15 14:28:44,331] multiqc [DEBUG ] No samples found: preseq [2020-06-15 14:28:44,387] multiqc [DEBUG ] No samples found: quast [2020-06-15 14:28:44,439] multiqc [DEBUG ] No samples found: qorts [2020-06-15 14:28:44,511] multiqc [DEBUG ] No samples found: rna_seqc [2020-06-15 14:28:44,576] multiqc [DEBUG ] No samples found: rsem [2020-06-15 14:28:44,766] multiqc [DEBUG ] No samples found: rseqc [2020-06-15 14:28:44,811] multiqc [DEBUG ] No samples found: busco [2020-06-15 14:28:44,841] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-06-15 14:28:44,887] multiqc [DEBUG ] No samples found: disambiguate [2020-06-15 14:28:44,986] multiqc [DEBUG ] No samples found: supernova [2020-06-15 14:28:45,233] multiqc [DEBUG ] No samples found: deeptools [2020-06-15 14:28:45,308] multiqc [DEBUG ] No samples found: sargasso [2020-06-15 14:28:45,346] multiqc [DEBUG ] No samples found: verifybamid [2020-06-15 14:28:45,455] multiqc [DEBUG ] No samples found: mirtrace [2020-06-15 14:28:45,534] multiqc [DEBUG ] No samples found: happy [2020-06-15 14:28:45,622] multiqc [DEBUG ] No samples found: homer [2020-06-15 14:28:45,658] multiqc [DEBUG ] No samples found: macs2 [2020-06-15 14:28:45,698] multiqc [DEBUG ] No samples found: theta2 [2020-06-15 14:28:45,788] multiqc [DEBUG ] No samples found: snpeff [2020-06-15 14:28:45,927] multiqc [DEBUG ] No samples found: gatk [2020-06-15 14:28:45,938] multiqc [DEBUG ] No samples found: htseq [2020-06-15 14:28:45,982] multiqc [DEBUG ] No samples found: bcftools [2020-06-15 14:28:46,018] multiqc [DEBUG ] No samples found: featureCounts [2020-06-15 14:28:46,050] multiqc [DEBUG ] No samples found: fgbio [2020-06-15 14:28:46,073] multiqc [DEBUG ] No samples found: dedup [2020-06-15 14:28:46,137] multiqc [DEBUG ] No samples found: damageprofiler [2020-06-15 14:28:46,484] multiqc [DEBUG ] No samples found: biobambam2 [2020-06-15 14:28:46,519] multiqc [DEBUG ] No samples found: mtnucratio [2020-06-15 14:28:46,524] multiqc [DEBUG ] No samples found: picard [2020-06-15 14:28:46,550] multiqc [DEBUG ] No samples found: prokka [2020-06-15 14:28:46,590] multiqc [DEBUG ] No samples found: samblaster [2020-06-15 14:28:46,675] multiqc [DEBUG ] No samples found: samtools [2020-06-15 14:28:46,711] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-06-15 14:28:46,732] multiqc [DEBUG ] No samples found: bamtools [2020-06-15 14:28:46,739] multiqc [DEBUG ] No samples found: jellyfish [2020-06-15 14:28:46,821] multiqc [DEBUG ] No samples found: vcftools [2020-06-15 14:28:46,842] multiqc [DEBUG ] No samples found: longranger [2020-06-15 14:28:46,890] multiqc [DEBUG ] No samples found: stacks [2020-06-15 14:28:47,077] multiqc [DEBUG ] No samples found: bbmap [2020-06-15 14:28:47,150] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,151] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,152] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,154] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,155] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,156] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R2_001_val_2 [2020-06-15 14:28:47,156] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,157] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,158] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,158] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R2_001_val_2 [2020-06-15 14:28:47,159] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,160] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,160] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,161] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,162] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R2_001_val_2 [2020-06-15 14:28:47,162] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,163] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R2_001_val_2 [2020-06-15 14:28:47,164] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R2_001_val_2 [2020-06-15 14:28:47,164] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,165] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,166] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R2_001_val_2 [2020-06-15 14:28:47,166] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,167] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,168] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,168] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R2_001_val_2 [2020-06-15 14:28:47,169] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,170] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,170] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,171] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,172] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R2_001_val_2 [2020-06-15 14:28:47,172] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,173] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R2_001_val_2 [2020-06-15 14:28:47,173] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R2_001_val_2 [2020-06-15 14:28:47,174] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,175] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,175] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R2_001_val_2 [2020-06-15 14:28:47,176] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,176] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,177] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,178] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R2_001_val_2 [2020-06-15 14:28:47,178] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,179] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,180] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,180] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,181] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R2_001_val_2 [2020-06-15 14:28:47,181] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,182] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R2_001_val_2 [2020-06-15 14:28:47,183] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R2_001_val_2 [2020-06-15 14:28:47,183] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,184] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,184] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R2_001_val_2 [2020-06-15 14:28:47,185] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,186] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,186] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,187] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R2_001_val_2 [2020-06-15 14:28:47,187] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,188] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,188] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,189] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,190] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R2_001_val_2 [2020-06-15 14:28:47,190] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,191] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R2_001_val_2 [2020-06-15 14:28:47,191] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R2_001_val_2 [2020-06-15 14:28:47,192] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,193] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,194] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_26psu_1_S13_R1_001_val_1 [2020-06-15 14:28:47,196] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 16C_32psu_4_S4_R1_001_val_1 [2020-06-15 14:28:47,196] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: CTRL_8C_26psu_1_S17_R1_001_val_1 [2020-06-15 14:28:47,197] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_26psu_2_S10_R1_001_val_1 [2020-06-15 14:28:47,197] multiqc.modules.bismark.bismark [DEBUG ] Duplicate alignment sample log found! Overwriting: 8C_32psu_3_S7_R1_001_val_1 [2020-06-15 14:28:47,619] multiqc.modules.bismark.bismark [INFO ] Found 25 bismark alignment reports [2020-06-15 14:28:47,623] multiqc.modules.bismark.bismark [INFO ] Found 20 bismark dedup reports [2020-06-15 14:28:47,624] multiqc.modules.bismark.bismark [INFO ] Found 20 bismark methextract reports [2020-06-15 14:28:47,674] multiqc [DEBUG ] No samples found: biscuit [2020-06-15 14:28:47,743] multiqc [DEBUG ] No samples found: hicexplorer [2020-06-15 14:28:47,769] multiqc [DEBUG ] No samples found: hicup [2020-06-15 14:28:47,803] multiqc [DEBUG ] No samples found: hicpro [2020-06-15 14:28:47,813] multiqc [DEBUG ] No samples found: salmon [2020-06-15 14:28:47,851] multiqc [DEBUG ] No samples found: kallisto [2020-06-15 14:28:47,900] multiqc [DEBUG ] No samples found: slamdunk [2020-06-15 14:28:47,967] multiqc [DEBUG ] No samples found: star [2020-06-15 14:28:47,995] multiqc [DEBUG ] No samples found: hisat2 [2020-06-15 14:28:48,040] multiqc [DEBUG ] No samples found: tophat [2020-06-15 14:28:48,079] multiqc [DEBUG ] No samples found: bowtie2 [2020-06-15 14:28:48,106] multiqc [DEBUG ] No samples found: bowtie1 [2020-06-15 14:28:48,115] multiqc [DEBUG ] No samples found: kat [2020-06-15 14:28:48,123] multiqc [DEBUG ] No samples found: leehom [2020-06-15 14:28:48,171] multiqc [DEBUG ] No samples found: adapterRemoval [2020-06-15 14:28:48,178] multiqc [DEBUG ] No samples found: clipandmerge [2020-06-15 14:28:48,252] multiqc [DEBUG ] No samples found: cutadapt [2020-06-15 14:28:48,262] multiqc [DEBUG ] No samples found: flexbar [2020-06-15 14:28:48,336] multiqc [DEBUG ] No samples found: trimmomatic [2020-06-15 14:28:48,361] multiqc [DEBUG ] No samples found: skewer [2020-06-15 14:28:48,414] multiqc [DEBUG ] No samples found: sortmerna [2020-06-15 14:28:48,440] multiqc [DEBUG ] No samples found: biobloomtools [2020-06-15 14:28:48,465] multiqc [DEBUG ] No samples found: fastq_screen [2020-06-15 14:28:48,502] multiqc [DEBUG ] No samples found: afterqc [2020-06-15 14:28:48,543] multiqc [DEBUG ] No samples found: fastp [2020-06-15 14:28:48,581] multiqc [DEBUG ] No samples found: fastqc [2020-06-15 14:28:48,611] multiqc [DEBUG ] No samples found: minionqc [2020-06-15 14:28:48,640] multiqc [DEBUG ] No samples found: mosdepth [2020-06-15 14:28:48,663] multiqc [DEBUG ] No samples found: clusterflow [2020-06-15 14:28:48,723] multiqc [DEBUG ] No samples found: bcl2fastq [2020-06-15 14:28:48,793] multiqc [DEBUG ] No samples found: interop [2020-06-15 14:28:48,828] multiqc [DEBUG ] No samples found: flash [2020-06-15 14:28:48,871] multiqc [DEBUG ] No samples found: seqyclean [2020-06-15 14:28:48,952] multiqc [INFO ] Compressing plot data [2020-06-15 14:28:49,303] multiqc [INFO ] Report : multiqc_report.html [2020-06-15 14:28:49,303] multiqc [INFO ] Data : multiqc_data [2020-06-15 14:28:49,303] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:49,304] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:49,305] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:49,306] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:49,307] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:49,308] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:49,309] multiqc [DEBUG ] Moving data file from '/tmp/tmplmha8hsc/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/strigg/analyses/20200613/multiqc_data' [2020-06-15 14:28:50,389] multiqc [INFO ] MultiQC complete