CTRL_16C_26psu_2_S21_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 8380148 lines in total Total number of methylation call strings processed: 16760296 Final Cytosine Methylation Report ================================= Total number of C's analysed: 153536681 Total methylated C's in CpG context: 13508321 Total methylated C's in CHG context: 357968 Total methylated C's in CHH context: 1471343 Total C to T conversions in CpG context: 3640455 Total C to T conversions in CHG context: 39114893 Total C to T conversions in CHH context: 95443701 C methylated in CpG context: 78.8% C methylated in CHG context: 0.9% C methylated in CHH context: 1.5%