8C_32psu_1_S5_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 9327198 lines in total Total number of methylation call strings processed: 18654396 Final Cytosine Methylation Report ================================= Total number of C's analysed: 159471959 Total methylated C's in CpG context: 13654054 Total methylated C's in CHG context: 295788 Total methylated C's in CHH context: 1606628 Total C to T conversions in CpG context: 3988212 Total C to T conversions in CHG context: 40957354 Total C to T conversions in CHH context: 98969923 C methylated in CpG context: 77.4% C methylated in CHG context: 0.7% C methylated in CHH context: 1.6%