16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 9662445 lines in total Total number of methylation call strings processed: 19324890 Final Cytosine Methylation Report ================================= Total number of C's analysed: 241945138 Total methylated C's in CpG context: 16512076 Total methylated C's in CHG context: 409327 Total methylated C's in CHH context: 1875607 Total C to T conversions in CpG context: 4926412 Total C to T conversions in CHG context: 56835701 Total C to T conversions in CHH context: 161386015 C methylated in CpG context: 77.0% C methylated in CHG context: 0.7% C methylated in CHH context: 1.1%