16C_32psu_3_S3_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 9620844 lines in total Total number of methylation call strings processed: 19241688 Final Cytosine Methylation Report ================================= Total number of C's analysed: 183063193 Total methylated C's in CpG context: 13864649 Total methylated C's in CHG context: 332217 Total methylated C's in CHH context: 1861270 Total C to T conversions in CpG context: 4110127 Total C to T conversions in CHG context: 46062512 Total C to T conversions in CHH context: 116832418 C methylated in CpG context: 77.1% C methylated in CHG context: 0.7% C methylated in CHH context: 1.6%