16C_32psu_2_S2_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 11927900 lines in total Total number of methylation call strings processed: 23855800 Final Cytosine Methylation Report ================================= Total number of C's analysed: 239902879 Total methylated C's in CpG context: 17682512 Total methylated C's in CHG context: 436965 Total methylated C's in CHH context: 2601351 Total C to T conversions in CpG context: 5391818 Total C to T conversions in CHG context: 59170694 Total C to T conversions in CHH context: 154619539 C methylated in CpG context: 76.6% C methylated in CHG context: 0.7% C methylated in CHH context: 1.7%