16C_32psu_1_S1_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 12593533 lines in total Total number of methylation call strings processed: 25187066 Final Cytosine Methylation Report ================================= Total number of C's analysed: 250485240 Total methylated C's in CpG context: 19238481 Total methylated C's in CHG context: 445647 Total methylated C's in CHH context: 2254962 Total C to T conversions in CpG context: 5542631 Total C to T conversions in CHG context: 61448256 Total C to T conversions in CHH context: 161555263 C methylated in CpG context: 77.6% C methylated in CHG context: 0.7% C methylated in CHH context: 1.4%