16C_26psu_4_S16_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 11197235 lines in total Total number of methylation call strings processed: 22394470 Final Cytosine Methylation Report ================================= Total number of C's analysed: 235545429 Total methylated C's in CpG context: 17626951 Total methylated C's in CHG context: 422229 Total methylated C's in CHH context: 2530398 Total C to T conversions in CpG context: 5019730 Total C to T conversions in CHG context: 57924130 Total C to T conversions in CHH context: 152021991 C methylated in CpG context: 77.8% C methylated in CHG context: 0.7% C methylated in CHH context: 1.6%