16C_26psu_3_S15_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 7550054 lines in total Total number of methylation call strings processed: 15100108 Final Cytosine Methylation Report ================================= Total number of C's analysed: 172933135 Total methylated C's in CpG context: 11655976 Total methylated C's in CHG context: 348250 Total methylated C's in CHH context: 3345402 Total C to T conversions in CpG context: 3270575 Total C to T conversions in CHG context: 43119820 Total C to T conversions in CHH context: 111193112 C methylated in CpG context: 78.1% C methylated in CHG context: 0.8% C methylated in CHH context: 2.9%