16C_26psu_2_S14_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Processed 10574527 lines in total Total number of methylation call strings processed: 21149054 Final Cytosine Methylation Report ================================= Total number of C's analysed: 236974537 Total methylated C's in CpG context: 17344835 Total methylated C's in CHG context: 416891 Total methylated C's in CHH context: 2278775 Total C to T conversions in CpG context: 4996551 Total C to T conversions in CHG context: 57785930 Total C to T conversions in CHH context: 154151555 C methylated in CpG context: 77.6% C methylated in CHG context: 0.7% C methylated in CHH context: 1.5%