Input data and parameters 

Samples

F1 /Users/strigg/Desktop/20200429/Sealice_F1_S20_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted_stats
F2 /Users/strigg/Desktop/20200429/Sealice_F2_S22_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted_stats

Summary 

Globals

Number of samples 2
Total number of mapped reads 131,411,324
Mean samples coverage 13.58
Mean samples GC-content 20.99
Mean samples mapping quality 18.18
Mean samples insert size 121.5

Sample statistics

Sample name Coverage mean Coverage std GC percentage Mapping quality mean Insert size median
F1 16.4619 61.5992 20.32 18.0501 128.0
F2 10.698 39.3661 21.66 18.3105 115.0

PCA 

Coverage Across Reference 

Coverage Histogram (0 - 46723X) 

Global Coverage Histogram 

Genome Fraction Coverage 

Duplication Rate Histogram 

Mapped reads GC-content 

Mapped Reads Clipping Profile 

Mapped Reads GC-content Distribution 

Mapping Quality Across Reference 

Mapping Quality Histogram 

Insert Size Across Reference 

Insert Size Histogram