Input data and parameters 

Samples

F1 /Users/strigg/Desktop/20200427/Sealice_F1_S20.dedup.sorted_stats
F2 /Users/strigg/Desktop/20200427/Sealice_F2_S22.dedup.sorted_stats

Summary 

Globals

Number of samples 2
Total number of mapped reads 132,859,598
Mean samples coverage 15.5
Mean samples GC-content 21.27
Mean samples mapping quality 15.99
Mean samples insert size 138

Sample statistics

Sample name Coverage mean Coverage std GC percentage Mapping quality mean Insert size median
F1 18.7775 66.3745 20.62 15.8508 143.0
F2 12.2283 42.6626 21.92 16.1308 133.0

PCA 

Coverage Across Reference 

Coverage Histogram (0 - 46862X) 

Global Coverage Histogram 

Genome Fraction Coverage 

Duplication Rate Histogram 

Mapped reads GC-content 

Mapped Reads Clipping Profile 

Mapped Reads GC-content Distribution 

Mapping Quality Across Reference 

Mapping Quality Histogram 

Insert Size Across Reference 

Insert Size Histogram