[2020-04-28 15:25:51,784] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2020-04-28 15:25:51,785] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/strigg/.multiqc_config.yaml [2020-04-28 15:25:51,785] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-04-28 15:25:51,785] multiqc [DEBUG ] Command used: /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_FASTQS /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned [2020-04-28 15:25:57,073] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2020-04-28 15:25:57,073] multiqc [INFO ] This is MultiQC v1.8 [2020-04-28 15:25:57,074] multiqc [DEBUG ] Command : /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_FASTQS /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned [2020-04-28 15:25:57,074] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned [2020-04-28 15:25:57,074] multiqc [INFO ] Template : default [2020-04-28 15:25:57,074] multiqc [DEBUG ] Running Python 3.7.6 | packaged by conda-forge | (default, Mar 5 2020, 15:27:18) [GCC 7.3.0] [2020-04-28 15:25:57,074] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_FASTQS [2020-04-28 15:25:57,074] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned [2020-04-28 15:25:57,075] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-04-28 15:25:57,076] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpv1a3xkdw [2020-04-28 15:25:57,861] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:57,937] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:57,942] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:57,973] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,011] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,038] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:58,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,075] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,087] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:58,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F1_S20_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,122] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F1_S20_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,129] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,174] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,211] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,214] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,249] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,283] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,286] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,297] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:58,298] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,314] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,317] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,328] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:58,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,470] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,473] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:58,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:58,545] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,548] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,582] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F2_S22_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F2_S22_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,661] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,663] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:58,676] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,677] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,678] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:58,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:58,679] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,708] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,720] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:58,740] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,743] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,779] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,782] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,814] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,817] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,871] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,873] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,884] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,902] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,904] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,915] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:58,942] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,944] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:58,956] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,966] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:58,978] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:58,999] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,002] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,014] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:59,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,104] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,137] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,140] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,176] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,178] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:59,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,240] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,243] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,278] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,281] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,334] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,391] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F2_S22_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,392] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F2_S22_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:59,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,410] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,416] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:59,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,480] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,503] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,506] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:59,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,557] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,558] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,574] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_2_S6_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,612] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,615] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_4_S4_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,652] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,664] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_2_S18_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,827] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,841] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L002_R2_001_val_2.fq.gz [2020-04-28 15:25:59,842] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,865] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,880] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L002_R1_001_val_1.fq.gz [2020-04-28 15:25:59,889] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,890] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,895] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L001_R1_001_val_1.fq.gz [2020-04-28 15:25:59,918] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,921] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,932] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L001_R2_001_val_2.fq.gz [2020-04-28 15:25:59,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:25:59,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,000] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,003] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L001_R2_001_val_2.fq.gz [2020-04-28 15:26:00,015] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F1_S20_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F1_S20_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,061] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,063] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_1_S19_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L002_R1_001_val_1.fq.gz [2020-04-28 15:26:00,075] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:00,092] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,121] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,150] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F2_S22_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F2_S22_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:00,165] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,198] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,213] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L002_R1_001_val_1.fq.gz [2020-04-28 15:26:00,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,236] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,248] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,276] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,291] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F1_S20_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,292] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F1_S20_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,316] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,318] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_1_S9_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,354] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,357] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_1_S5_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F1_S20_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F1_S20_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L001_R2_001_val_2.fq.gz [2020-04-28 15:26:00,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L001_R2_001_val_2.fq.gz [2020-04-28 15:26:00,436] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,438] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,466] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,468] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,514] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,558] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,570] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1.fq.gz [2020-04-28 15:26:00,585] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,586] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L001_R2_001_val_2.fq.gz [2020-04-28 15:26:00,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: Sealice_F2_S22_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,617] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: Sealice_F2_S22_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,652] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:00,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_1_S13_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,774] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L002_R1_001_val_1.fq.gz [2020-04-28 15:26:00,804] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,807] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_4_S8_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,840] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,843] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,873] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,875] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_3_S3_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,886] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,901] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,902] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_32psu_3_S7_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,914] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:00,917] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,917] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_16C_26psu_2_S21_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,923] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:00,941] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,943] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_2_S14_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_2_S2_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:00,988] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L001_R2_001_val_2.fq.gz [2020-04-28 15:26:01,016] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_4_S12_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,032] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:01,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,092] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_2_S10_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:01,104] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:01,115] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,116] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_32psu_1_S1_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,124] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L002_R2_001_val_2.fq.gz [2020-04-28 15:26:01,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-28 15:26:01,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:01,155] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L001_R2_001_val_2.fq.gz [2020-04-28 15:26:01,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1.fq.gz [2020-04-28 15:26:01,156] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L002_R1_001_val_1.fq.gz [2020-04-28 15:26:01,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_R1_001_val_1.fq.gz [2020-04-28 15:26:01,157] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_R2_001_val_2.fq.gz [2020-04-28 15:26:01,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_R1_001_val_1.fq.gz [2020-04-28 15:26:01,158] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_R2_001_val_2.fq.gz [2020-04-28 15:26:01,160] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,161] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,162] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,183] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,184] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,201] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,203] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,204] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,205] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,206] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,209] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,276] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,278] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,281] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,283] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,285] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,286] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,287] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,288] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,289] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,292] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,294] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,296] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,301] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,302] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,303] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,304] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,307] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,308] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_3_S3_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,315] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,352] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,356] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,357] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,359] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,360] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,361] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,363] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,366] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,367] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_1_S19_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,372] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,377] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,381] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_1_S9_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,384] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,389] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_2_S10_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,392] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_4_S12_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_1_S5_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_4_S8_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,403] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,407] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_1_S1_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,409] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L001_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_16C_26psu_2_S21_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,410] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,411] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_4_S4_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,418] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_3_S7_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,420] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_1_S13_L002_R2_001_val_2_fastqc.html [2020-04-28 15:26:01,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,421] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_32psu_2_S2_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,422] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_2_S14_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_2_S18_L001_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_32psu_2_S6_L002_R1_001_val_1_fastqc.html [2020-04-28 15:26:01,424] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_R1_001_val_1_bismark_bt2_pe.bam [2020-04-28 15:26:01,440] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_R1_001_val_1_bismark_bt2_pe.bam [2020-04-28 15:26:01,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-04-28 15:26:01,478] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-04-28 15:26:01,539] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2537105.out [2020-04-28 15:26:01,542] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2537105.out [2020-04-28 15:26:01,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: slurm-2537134.out [2020-04-28 15:26:01,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: slurm-2537134.out [2020-04-28 15:26:01,656] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-04-28 15:26:01,658] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam [2020-04-28 15:26:01,665] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F2_S22_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-04-28 15:26:01,666] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: Sealice_F1_S20_R1_001_val_1_bismark_bt2_pe.deduplicated.sorted.bam.bai [2020-04-28 15:26:06,521] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.5 [2020-04-28 15:26:06,540] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.5 [2020-04-28 15:26:06,610] multiqc [DEBUG ] No samples found: custom_content [2020-04-28 15:26:06,739] multiqc [DEBUG ] No samples found: conpair [2020-04-28 15:26:06,832] multiqc [DEBUG ] No samples found: peddy [2020-04-28 15:26:06,973] multiqc [DEBUG ] No samples found: methylQA [2020-04-28 15:26:07,040] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-04-28 15:26:07,211] multiqc [DEBUG ] No samples found: qualimap [2020-04-28 15:26:07,271] multiqc [DEBUG ] No samples found: preseq [2020-04-28 15:26:07,332] multiqc [DEBUG ] No samples found: quast [2020-04-28 15:26:07,419] multiqc [DEBUG ] No samples found: qorts [2020-04-28 15:26:07,479] multiqc [DEBUG ] No samples found: rna_seqc [2020-04-28 15:26:07,552] multiqc [DEBUG ] No samples found: rsem [2020-04-28 15:26:07,770] multiqc [DEBUG ] No samples found: rseqc [2020-04-28 15:26:07,831] multiqc [DEBUG ] No samples found: busco [2020-04-28 15:26:07,900] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-04-28 15:26:07,991] multiqc [DEBUG ] No samples found: disambiguate [2020-04-28 15:26:08,070] multiqc [DEBUG ] No samples found: supernova [2020-04-28 15:26:08,322] multiqc [DEBUG ] No samples found: deeptools [2020-04-28 15:26:08,392] multiqc [DEBUG ] No samples found: sargasso [2020-04-28 15:26:08,462] multiqc [DEBUG ] No samples found: verifybamid [2020-04-28 15:26:08,528] multiqc [DEBUG ] No samples found: mirtrace [2020-04-28 15:26:08,589] multiqc [DEBUG ] No samples found: happy [2020-04-28 15:26:08,679] multiqc [DEBUG ] No samples found: homer [2020-04-28 15:26:08,718] multiqc [DEBUG ] No samples found: macs2 [2020-04-28 15:26:08,775] multiqc [DEBUG ] No samples found: theta2 [2020-04-28 15:26:08,845] multiqc [DEBUG ] No samples found: snpeff [2020-04-28 15:26:08,966] multiqc [DEBUG ] No samples found: gatk [2020-04-28 15:26:09,001] multiqc [DEBUG ] No samples found: htseq [2020-04-28 15:26:09,054] multiqc [DEBUG ] No samples found: bcftools [2020-04-28 15:26:09,106] multiqc [DEBUG ] No samples found: featureCounts [2020-04-28 15:26:09,167] multiqc [DEBUG ] No samples found: fgbio [2020-04-28 15:26:09,187] multiqc [DEBUG ] No samples found: dedup [2020-04-28 15:26:09,252] multiqc [DEBUG ] No samples found: damageprofiler [2020-04-28 15:26:09,614] multiqc [DEBUG ] No samples found: biobambam2 [2020-04-28 15:26:09,645] multiqc [DEBUG ] No samples found: mtnucratio [2020-04-28 15:26:09,653] multiqc [DEBUG ] No samples found: picard [2020-04-28 15:26:09,704] multiqc [DEBUG ] No samples found: prokka [2020-04-28 15:26:09,745] multiqc [DEBUG ] No samples found: samblaster [2020-04-28 15:26:09,876] multiqc [DEBUG ] No samples found: samtools [2020-04-28 15:26:09,920] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-04-28 15:26:09,962] multiqc [DEBUG ] No samples found: bamtools [2020-04-28 15:26:09,975] multiqc [DEBUG ] No samples found: jellyfish [2020-04-28 15:26:10,049] multiqc [DEBUG ] No samples found: vcftools [2020-04-28 15:26:10,089] multiqc [DEBUG ] No samples found: longranger [2020-04-28 15:26:10,194] multiqc [DEBUG ] No samples found: stacks [2020-04-28 15:26:10,674] multiqc [DEBUG ] No samples found: bbmap [2020-04-28 15:26:10,898] multiqc.modules.bismark.bismark [INFO ] Found 2 bismark alignment reports [2020-04-28 15:26:10,904] multiqc.modules.bismark.bismark [INFO ] Found 2 bismark dedup reports [2020-04-28 15:26:10,904] multiqc.modules.bismark.bismark [INFO ] Found 2 bismark methextract reports [2020-04-28 15:26:10,939] multiqc [DEBUG ] No samples found: biscuit [2020-04-28 15:26:10,981] multiqc [DEBUG ] No samples found: hicexplorer [2020-04-28 15:26:11,027] multiqc [DEBUG ] No samples found: hicup [2020-04-28 15:26:11,053] multiqc [DEBUG ] No samples found: hicpro [2020-04-28 15:26:11,066] multiqc [DEBUG ] No samples found: salmon [2020-04-28 15:26:11,098] multiqc [DEBUG ] No samples found: kallisto [2020-04-28 15:26:11,173] multiqc [DEBUG ] No samples found: slamdunk [2020-04-28 15:26:11,259] multiqc [DEBUG ] No samples found: star [2020-04-28 15:26:11,304] multiqc [DEBUG ] No samples found: hisat2 [2020-04-28 15:26:11,342] multiqc [DEBUG ] No samples found: tophat [2020-04-28 15:26:11,406] multiqc [DEBUG ] No samples found: bowtie2 [2020-04-28 15:26:11,435] multiqc [DEBUG ] No samples found: bowtie1 [2020-04-28 15:26:11,449] multiqc [DEBUG ] No samples found: kat [2020-04-28 15:26:11,471] multiqc [DEBUG ] No samples found: leehom [2020-04-28 15:26:11,547] multiqc [DEBUG ] No samples found: adapterRemoval [2020-04-28 15:26:11,562] multiqc [DEBUG ] No samples found: clipandmerge [2020-04-28 15:26:11,733] multiqc.modules.cutadapt.cutadapt [INFO ] Found 88 reports [2020-04-28 15:26:11,783] multiqc [DEBUG ] No samples found: flexbar [2020-04-28 15:26:11,819] multiqc [DEBUG ] No samples found: trimmomatic [2020-04-28 15:26:11,848] multiqc [DEBUG ] No samples found: skewer [2020-04-28 15:26:11,870] multiqc [DEBUG ] No samples found: sortmerna [2020-04-28 15:26:11,962] multiqc [DEBUG ] No samples found: biobloomtools [2020-04-28 15:26:12,071] multiqc [DEBUG ] No samples found: fastq_screen [2020-04-28 15:26:12,190] multiqc [DEBUG ] No samples found: afterqc [2020-04-28 15:26:12,310] multiqc [DEBUG ] No samples found: fastp [2020-04-28 15:26:21,871] multiqc.modules.fastqc.fastqc [INFO ] Found 88 reports [2020-04-28 15:26:23,071] multiqc [DEBUG ] No samples found: minionqc [2020-04-28 15:26:23,108] multiqc [DEBUG ] No samples found: mosdepth [2020-04-28 15:26:23,139] multiqc [DEBUG ] No samples found: clusterflow [2020-04-28 15:26:23,225] multiqc [DEBUG ] No samples found: bcl2fastq [2020-04-28 15:26:23,273] multiqc [DEBUG ] No samples found: interop [2020-04-28 15:26:23,303] multiqc [DEBUG ] No samples found: flash [2020-04-28 15:26:23,339] multiqc [DEBUG ] No samples found: seqyclean [2020-04-28 15:26:23,442] multiqc [INFO ] Compressing plot data [2020-04-28 15:26:24,808] multiqc [INFO ] Report : multiqc_report.html [2020-04-28 15:26:24,809] multiqc [INFO ] Data : multiqc_data [2020-04-28 15:26:24,810] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,810] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,811] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,812] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,813] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_cutadapt.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,814] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,815] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,816] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:24,816] multiqc [DEBUG ] Moving data file from '/tmp/tmpv1a3xkdw/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/strigg/analyses/20200427/TG_PE_Calig_Aligned/multiqc_data' [2020-04-28 15:26:25,962] multiqc [INFO ] MultiQC complete