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        Note that additional data was saved in multiqc_data_1 when this report was generated.

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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.8

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2020-06-16, 16:40 based on data in: /Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned

        General Statistics

        Showing 4/4 rows and 5/6 columns.
        Sample Name% mCpG% mCHG% mCHHM C's% Dups
        16C_26psu_3_S15_L001_R1_001
        75.1%
        1.2%
        8.5%
        272.4
        28.4%
        16C_26psu_4_S16_L002_R1_001
        75.1%
        1.0%
        4.7%
        343.5
        18.9%
        8C_26psu_3_S11_L001_R1_001
        75.8%
        1.0%
        4.4%
        296.3
        21.7%
        CTRL_8C_26psu_1_S17_L001_R1_001
        74.9%
        0.9%
        3.2%
        279.9
        23.7%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.

        Deduplication

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        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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        MultiQC v1.8 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.