[2020-06-16 16:43:42,122] multiqc [DEBUG ] No MultiQC config found: /Users/strigg/anaconda3/lib/python3.6/site-packages/multiqc_config.yaml [2020-06-16 16:43:42,123] multiqc [DEBUG ] No MultiQC config found: /Users/strigg/.multiqc_config.yaml [2020-06-16 16:43:42,125] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-06-16 16:43:42,125] multiqc [DEBUG ] Command used: /Users/strigg/anaconda3/bin/multiqc . ../../20200422/TG_SE_local_aligned/ ../../20200422/TG_SE_FASTQS ../../20200422/TG_SE_FASTQS/FastQC [2020-06-16 16:43:42,842] multiqc [WARNING] MultiQC Version v1.9 now available! [2020-06-16 16:43:42,843] multiqc [INFO ] This is MultiQC v1.8 [2020-06-16 16:43:42,843] multiqc [DEBUG ] Command : /Users/strigg/anaconda3/bin/multiqc . ../../20200422/TG_SE_local_aligned/ ../../20200422/TG_SE_FASTQS ../../20200422/TG_SE_FASTQS/FastQC [2020-06-16 16:43:42,843] multiqc [DEBUG ] Working dir : /Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned [2020-06-16 16:43:42,843] multiqc [INFO ] Template : default [2020-06-16 16:43:42,843] multiqc [DEBUG ] Running Python 3.6.8 |Anaconda, Inc.| (default, Dec 29 2018, 19:04:46) [GCC 4.2.1 Compatible Clang 4.0.1 (tags/RELEASE_401/final)] [2020-06-16 16:43:42,843] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned [2020-06-16 16:43:42,844] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Salmo_Calig/analyses/20200422/TG_SE_local_aligned [2020-06-16 16:43:42,844] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Salmo_Calig/analyses/20200422/TG_SE_FASTQS [2020-06-16 16:43:42,844] multiqc [INFO ] Searching : /Volumes/web/metacarcinus/Salmo_Calig/analyses/20200422/TG_SE_FASTQS/FastQC [2020-06-16 16:43:42,845] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-06-16 16:43:42,845] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w [2020-06-16 16:43:43,045] multiqc [DEBUG ] Ignoring directory as matched fn_ignore_dirs: ./multiqc_data [2020-06-16 16:43:43,177] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam.bai [2020-06-16 16:43:43,178] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam.bai [2020-06-16 16:43:43,179] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam.bai [2020-06-16 16:43:43,181] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam [2020-06-16 16:43:43,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report_1.html [2020-06-16 16:43:43,189] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_bismark_bt2.multiple.deduplicated.bam [2020-06-16 16:43:43,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.bam [2020-06-16 16:43:43,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_bismark_bt2.multiple_5x.bed [2020-06-16 16:43:43,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.bam [2020-06-16 16:43:43,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam [2020-06-16 16:43:43,195] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam [2020-06-16 16:43:43,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam [2020-06-16 16:43:43,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_bismark_bt2.multiple_5x.bed [2020-06-16 16:43:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: multiqc_report.html [2020-06-16 16:43:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_bismark_bt2.multiple_5x.bed [2020-06-16 16:43:43,197] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.sorted.bam.bai [2020-06-16 16:43:43,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_bismark_bt2.multiple_5x.bed [2020-06-16 16:43:43,199] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_bismark_bt2.multiple.deduplicated.bam [2020-06-16 16:43:45,399] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc.log [2020-06-16 16:43:45,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc.log [2020-06-16 16:43:48,594] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_sources.txt [2020-06-16 16:43:50,474] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: multiqc_data.json [2020-06-16 16:43:50,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: multiqc_data.json [2020-06-16 16:44:01,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,397] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,399] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,400] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_bismark_bt2.bam [2020-06-16 16:44:01,990] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:02,223] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:03,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:03,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:05,420] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:05,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:07,073] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:07,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:08,174] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_trimmed.fq.gz [2020-06-16 16:44:08,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed.fq.gz [2020-06-16 16:44:08,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed.fq.gz [2020-06-16 16:44:08,175] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_trimmed.fq.gz [2020-06-16 16:44:08,710] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:08,945] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:09,855] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed.fq.gz [2020-06-16 16:44:10,397] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:10,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:11,623] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_trimmed.fq.gz [2020-06-16 16:44:11,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed.fq.gz [2020-06-16 16:44:11,624] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_trimmed.fq.gz [2020-06-16 16:44:12,193] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:12,415] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:14,008] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:14,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt [2020-06-16 16:44:15,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,186] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,188] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,190] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,192] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,193] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,194] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,196] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_trimmed_fastqc.html [2020-06-16 16:44:15,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,198] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_trimmed_fastqc.html [2020-06-16 16:44:15,571] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.0.3 [2020-06-16 16:44:15,572] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.0.3 [2020-06-16 16:44:15,573] multiqc [DEBUG ] No samples found: custom_content [2020-06-16 16:44:15,579] multiqc [DEBUG ] No samples found: conpair [2020-06-16 16:44:15,585] multiqc [DEBUG ] No samples found: peddy [2020-06-16 16:44:15,591] multiqc [DEBUG ] No samples found: methylQA [2020-06-16 16:44:15,597] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-06-16 16:44:15,604] multiqc [DEBUG ] No samples found: qualimap [2020-06-16 16:44:15,609] multiqc [DEBUG ] No samples found: preseq [2020-06-16 16:44:15,615] multiqc [DEBUG ] No samples found: quast [2020-06-16 16:44:15,621] multiqc [DEBUG ] No samples found: qorts [2020-06-16 16:44:15,627] multiqc [DEBUG ] No samples found: rna_seqc [2020-06-16 16:44:15,633] multiqc [DEBUG ] No samples found: rsem [2020-06-16 16:44:15,642] multiqc [DEBUG ] No samples found: rseqc [2020-06-16 16:44:15,648] multiqc [DEBUG ] No samples found: busco [2020-06-16 16:44:15,653] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-06-16 16:44:15,659] multiqc [DEBUG ] No samples found: disambiguate [2020-06-16 16:44:15,665] multiqc [DEBUG ] No samples found: supernova [2020-06-16 16:44:15,675] multiqc [DEBUG ] No samples found: deeptools [2020-06-16 16:44:15,681] multiqc [DEBUG ] No samples found: sargasso [2020-06-16 16:44:15,686] multiqc [DEBUG ] No samples found: verifybamid [2020-06-16 16:44:15,692] multiqc [DEBUG ] No samples found: mirtrace [2020-06-16 16:44:15,698] multiqc [DEBUG ] No samples found: happy [2020-06-16 16:44:15,705] multiqc [DEBUG ] No samples found: homer [2020-06-16 16:44:15,711] multiqc [DEBUG ] No samples found: macs2 [2020-06-16 16:44:15,717] multiqc [DEBUG ] No samples found: theta2 [2020-06-16 16:44:15,722] multiqc [DEBUG ] No samples found: snpeff [2020-06-16 16:44:15,730] multiqc [DEBUG ] No samples found: gatk [2020-06-16 16:44:15,736] multiqc [DEBUG ] No samples found: htseq [2020-06-16 16:44:15,742] multiqc [DEBUG ] No samples found: bcftools [2020-06-16 16:44:15,748] multiqc [DEBUG ] No samples found: featureCounts [2020-06-16 16:44:15,754] multiqc [DEBUG ] No samples found: fgbio [2020-06-16 16:44:15,760] multiqc [DEBUG ] No samples found: dedup [2020-06-16 16:44:15,766] multiqc [DEBUG ] No samples found: damageprofiler [2020-06-16 16:44:15,777] multiqc [DEBUG ] No samples found: biobambam2 [2020-06-16 16:44:15,783] multiqc [DEBUG ] No samples found: mtnucratio [2020-06-16 16:44:15,788] multiqc [DEBUG ] No samples found: picard [2020-06-16 16:44:15,794] multiqc [DEBUG ] No samples found: prokka [2020-06-16 16:44:15,800] multiqc [DEBUG ] No samples found: samblaster [2020-06-16 16:44:15,808] multiqc [DEBUG ] No samples found: samtools [2020-06-16 16:44:15,814] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-06-16 16:44:15,820] multiqc [DEBUG ] No samples found: bamtools [2020-06-16 16:44:15,825] multiqc [DEBUG ] No samples found: jellyfish [2020-06-16 16:44:15,833] multiqc [DEBUG ] No samples found: vcftools [2020-06-16 16:44:15,839] multiqc [DEBUG ] No samples found: longranger [2020-06-16 16:44:15,845] multiqc [DEBUG ] No samples found: stacks [2020-06-16 16:44:15,855] multiqc [DEBUG ] No samples found: bbmap [2020-06-16 16:44:16,307] multiqc.modules.bismark.bismark [INFO ] Found 8 bismark alignment reports [2020-06-16 16:44:16,314] multiqc.modules.bismark.bismark [INFO ] Found 4 bismark dedup reports [2020-06-16 16:44:16,314] multiqc.modules.bismark.bismark [INFO ] Found 4 bismark methextract reports [2020-06-16 16:44:16,338] multiqc [DEBUG ] No samples found: biscuit [2020-06-16 16:44:16,344] multiqc [DEBUG ] No samples found: hicexplorer [2020-06-16 16:44:16,350] multiqc [DEBUG ] No samples found: hicup [2020-06-16 16:44:16,356] multiqc [DEBUG ] No samples found: hicpro [2020-06-16 16:44:16,362] multiqc [DEBUG ] No samples found: salmon [2020-06-16 16:44:16,368] multiqc [DEBUG ] No samples found: kallisto [2020-06-16 16:44:16,374] multiqc [DEBUG ] No samples found: slamdunk [2020-06-16 16:44:16,380] multiqc [DEBUG ] No samples found: star [2020-06-16 16:44:16,386] multiqc [DEBUG ] No samples found: hisat2 [2020-06-16 16:44:16,391] multiqc [DEBUG ] No samples found: tophat [2020-06-16 16:44:16,397] multiqc [DEBUG ] No samples found: bowtie2 [2020-06-16 16:44:16,403] multiqc [DEBUG ] No samples found: bowtie1 [2020-06-16 16:44:16,409] multiqc [DEBUG ] No samples found: kat [2020-06-16 16:44:16,415] multiqc [DEBUG ] No samples found: leehom [2020-06-16 16:44:16,421] multiqc [DEBUG ] No samples found: adapterRemoval [2020-06-16 16:44:16,427] multiqc [DEBUG ] No samples found: clipandmerge [2020-06-16 16:44:16,531] multiqc.modules.cutadapt.cutadapt [INFO ] Found 8 reports [2020-06-16 16:44:16,545] multiqc [DEBUG ] No samples found: flexbar [2020-06-16 16:44:16,551] multiqc [DEBUG ] No samples found: trimmomatic [2020-06-16 16:44:16,556] multiqc [DEBUG ] No samples found: skewer [2020-06-16 16:44:16,562] multiqc [DEBUG ] No samples found: sortmerna [2020-06-16 16:44:16,568] multiqc [DEBUG ] No samples found: biobloomtools [2020-06-16 16:44:16,574] multiqc [DEBUG ] No samples found: fastq_screen [2020-06-16 16:44:16,580] multiqc [DEBUG ] No samples found: afterqc [2020-06-16 16:44:16,586] multiqc [DEBUG ] No samples found: fastp [2020-06-16 16:44:19,063] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: 16C_26psu_4_S16_L002_R2_001 [2020-06-16 16:44:19,183] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: 8C_26psu_3_S11_L001_R1_001 [2020-06-16 16:44:19,296] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: 16C_26psu_4_S16_L002_R1_001 [2020-06-16 16:44:19,400] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: 16C_26psu_3_S15_L001_R1_001 [2020-06-16 16:44:19,506] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: 16C_26psu_3_S15_L001_R2_001 [2020-06-16 16:44:19,620] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: CTRL_8C_26psu_1_S17_L001_R1_001 [2020-06-16 16:44:19,749] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: 8C_26psu_3_S11_L001_R2_001 [2020-06-16 16:44:19,874] multiqc.modules.fastqc.fastqc [DEBUG ] Duplicate sample name found! Overwriting: CTRL_8C_26psu_1_S17_L001_R2_001 [2020-06-16 16:44:19,959] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2020-06-16 16:44:20,312] multiqc [DEBUG ] No samples found: minionqc [2020-06-16 16:44:20,318] multiqc [DEBUG ] No samples found: mosdepth [2020-06-16 16:44:20,324] multiqc [DEBUG ] No samples found: clusterflow [2020-06-16 16:44:20,330] multiqc [DEBUG ] No samples found: bcl2fastq [2020-06-16 16:44:20,336] multiqc [DEBUG ] No samples found: interop [2020-06-16 16:44:20,342] multiqc [DEBUG ] No samples found: flash [2020-06-16 16:44:20,347] multiqc [DEBUG ] No samples found: seqyclean [2020-06-16 16:44:20,394] multiqc [INFO ] Compressing plot data [2020-06-16 16:44:20,861] multiqc [WARNING] Previous MultiQC output found! Adjusting filenames.. [2020-06-16 16:44:20,861] multiqc [WARNING] Use -f or --force to overwrite existing reports instead [2020-06-16 16:44:20,862] multiqc [INFO ] Report : multiqc_report_2.html [2020-06-16 16:44:20,862] multiqc [INFO ] Data : multiqc_data_2 [2020-06-16 16:44:20,876] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_bismark_alignment.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:20,893] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_bismark_dedup.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:20,931] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_bismark_methextract.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:20,965] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_cutadapt.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:20,994] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_data.json' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:21,253] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_fastqc.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:21,287] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_general_stats.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:21,330] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:21,364] multiqc [DEBUG ] Moving data file from '/var/folders/_v/3qsffc0s69l8d4v9795nknd40000gt/T/tmp2ft92z7w/multiqc_data/multiqc_sources.txt' to '/Volumes/web/metacarcinus/Salmo_Calig/analyses/20200423/TG_SE_local_aligned/multiqc_data_2' [2020-06-16 16:44:21,679] multiqc [INFO ] MultiQC complete