16C_26psu_4_S16_L002_R1_001_trimmed_bismark_bt2.multiple.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 19080079 lines in total Total number of methylation call strings processed: 19080079 Final Cytosine Methylation Report ================================= Total number of C's analysed: 343502935 Total methylated C's in CpG context: 23673958 Total methylated C's in CHG context: 803059 Total methylated C's in CHH context: 10894660 Total C to T conversions in CpG context: 7852803 Total C to T conversions in CHG context: 79986201 Total C to T conversions in CHH context: 220292254 C methylated in CpG context: 75.1% C methylated in CHG context: 1.0% C methylated in CHH context: 4.7%