Module	Section	Sample Name	Source
Bismark	alignment	8C_26psu_3_S11_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/8C_26psu_3_S11_L001_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	CTRL_8C_26psu_1_S17_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/CTRL_8C_26psu_1_S17_L001_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	16C_26psu_3_S15_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_3_S15_L001_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	16C_26psu_4_S16_L002_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_4_S16_L002_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	16C_26psu_4_S16_L002_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_4_S16_L002_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	16C_26psu_3_S15_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_3_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	8C_26psu_3_S11_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/8C_26psu_3_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	CTRL_8C_26psu_1_S17_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/CTRL_8C_26psu_1_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	16C_26psu_3_S15_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_3_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	8C_26psu_3_S11_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/8C_26psu_3_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	16C_26psu_4_S16_L002_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_4_S16_L002_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	CTRL_8C_26psu_1_S17_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/CTRL_8C_26psu_1_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	16C_26psu_3_S15_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_3_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	CTRL_8C_26psu_1_S17_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/CTRL_8C_26psu_1_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	16C_26psu_4_S16_L002_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/16C_26psu_4_S16_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	8C_26psu_3_S11_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/8C_26psu_3_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Cutadapt	all_sections	8C_26psu_3_S11_L001_R2_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	16C_26psu_4_S16_L002_R1_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	8C_26psu_3_S11_L001_R1_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	16C_26psu_3_S15_L001_R2_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	16C_26psu_4_S16_L002_R2_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	CTRL_8C_26psu_1_S17_L001_R2_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	16C_26psu_3_S15_L001_R1_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	CTRL_8C_26psu_1_S17_L001_R1_001	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt
FastQC	all_sections	16C_26psu_3_S15_L001_R2_001_val_2	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/16C_26psu_3_S15_L001_R2_001_val_2_fastqc.zip
FastQC	all_sections	16C_26psu_4_S16_L002_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/16C_26psu_4_S16_L002_R1_001_val_1_fastqc.zip
FastQC	all_sections	16C_26psu_3_S15_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/16C_26psu_3_S15_L001_R1_001_val_1_fastqc.zip
FastQC	all_sections	CTRL_8C_26psu_1_S17_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/CTRL_8C_26psu_1_S17_L001_R1_001_val_1_fastqc.zip
FastQC	all_sections	8C_26psu_3_S11_L001_R2_001_val_2	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/8C_26psu_3_S11_L001_R2_001_val_2_fastqc.zip
FastQC	all_sections	8C_26psu_3_S11_L001_R1_001_val_1	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/8C_26psu_3_S11_L001_R1_001_val_1_fastqc.zip
FastQC	all_sections	16C_26psu_4_S16_L002_R2_001_val_2	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/16C_26psu_4_S16_L002_R2_001_val_2_fastqc.zip
FastQC	all_sections	CTRL_8C_26psu_1_S17_L001_R2_001_val_2	/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC/CTRL_8C_26psu_1_S17_L001_R2_001_val_2_fastqc.zip