[2020-04-22 23:29:03,994] multiqc [DEBUG ] No MultiQC config found: /gscratch/srlab/strigg/bin/anaconda3/lib/python3.7/site-packages/multiqc_config.yaml [2020-04-22 23:29:03,995] multiqc [DEBUG ] No MultiQC config found: /usr/lusers/strigg/.multiqc_config.yaml [2020-04-22 23:29:03,995] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2020-04-22 23:29:03,995] multiqc [DEBUG ] Command used: /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc -o /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/ /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/ /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/ [2020-04-22 23:29:09,155] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2020-04-22 23:29:09,155] multiqc [INFO ] This is MultiQC v1.8 [2020-04-22 23:29:09,155] multiqc [DEBUG ] Command : /gscratch/srlab/strigg/bin/anaconda3/bin/multiqc -o /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/ /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/ /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/ [2020-04-22 23:29:09,156] multiqc [DEBUG ] Working dir : /gscratch/scrubbed/strigg/analyses/20200422 [2020-04-22 23:29:09,156] multiqc [INFO ] Template : default [2020-04-22 23:29:09,156] multiqc [DEBUG ] Running Python 3.7.6 | packaged by conda-forge | (default, Mar 5 2020, 15:27:18) [GCC 7.3.0] [2020-04-22 23:29:09,156] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS [2020-04-22 23:29:09,156] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_FASTQS/FastQC [2020-04-22 23:29:09,156] multiqc [INFO ] Searching : /gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned [2020-04-22 23:29:09,157] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, minionqc, mosdepth, clusterflow, bcl2fastq, interop, flash, seqyclean [2020-04-22 23:29:09,158] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpb6oitfxc [2020-04-22 23:29:10,221] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,225] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,238] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_val_2.fq.gz [2020-04-22 23:29:10,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1.fq.gz [2020-04-22 23:29:10,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_val_2.fq.gz [2020-04-22 23:29:10,239] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_val_2.fq.gz [2020-04-22 23:29:10,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,263] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,275] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_val_2.fq.gz [2020-04-22 23:29:10,366] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 8C_26psu_3_S11_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,412] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,521] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,524] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_4_S16_L002_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,687] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R2_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,722] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,725] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: 16C_26psu_3_S15_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,738] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1.fq.gz [2020-04-22 23:29:10,765] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,768] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: CTRL_8C_26psu_1_S17_L001_R1_001.fastq.gz_trimming_report.txt [2020-04-22 23:29:10,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1.fq.gz [2020-04-22 23:29:10,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1.fq.gz [2020-04-22 23:29:10,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,780] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,781] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,783] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R2_001_val_2_fastqc.html [2020-04-22 23:29:10,784] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1_fastqc.html [2020-04-22 23:29:10,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-04-22 23:29:10,785] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1_bismark_bt2_pe.bam [2020-04-22 23:29:10,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1_bismark_bt2_pe.bam [2020-04-22 23:29:10,787] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8C_26psu_3_S11_L001_R1_001_val_1_bismark_bt2_pe.bam [2020-04-22 23:29:10,788] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_4_S16_L002_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-04-22 23:29:10,790] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1_bismark_bt2_pe.bam [2020-04-22 23:29:10,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: CTRL_8C_26psu_1_S17_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-04-22 23:29:10,791] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16C_26psu_3_S15_L001_R1_001_val_1_bismark_bt2_pe.deduplicated.bam [2020-04-22 23:29:16,924] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 2.2.5 [2020-04-22 23:29:16,953] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 2.2.5 [2020-04-22 23:29:17,011] multiqc [DEBUG ] No samples found: custom_content [2020-04-22 23:29:17,091] multiqc [DEBUG ] No samples found: conpair [2020-04-22 23:29:17,160] multiqc [DEBUG ] No samples found: peddy [2020-04-22 23:29:17,234] multiqc [DEBUG ] No samples found: methylQA [2020-04-22 23:29:17,307] multiqc [DEBUG ] No samples found: phantompeakqualtools [2020-04-22 23:29:17,434] multiqc [DEBUG ] No samples found: qualimap [2020-04-22 23:29:17,528] multiqc [DEBUG ] No samples found: preseq [2020-04-22 23:29:17,594] multiqc [DEBUG ] No samples found: quast [2020-04-22 23:29:17,692] multiqc [DEBUG ] No samples found: qorts [2020-04-22 23:29:17,763] multiqc [DEBUG ] No samples found: rna_seqc [2020-04-22 23:29:17,818] multiqc [DEBUG ] No samples found: rsem [2020-04-22 23:29:18,120] multiqc [DEBUG ] No samples found: rseqc [2020-04-22 23:29:18,158] multiqc [DEBUG ] No samples found: busco [2020-04-22 23:29:18,218] multiqc [DEBUG ] No samples found: goleft_indexcov [2020-04-22 23:29:18,267] multiqc [DEBUG ] No samples found: disambiguate [2020-04-22 23:29:18,331] multiqc [DEBUG ] No samples found: supernova [2020-04-22 23:29:18,605] multiqc [DEBUG ] No samples found: deeptools [2020-04-22 23:29:18,647] multiqc [DEBUG ] No samples found: sargasso [2020-04-22 23:29:18,691] multiqc [DEBUG ] No samples found: verifybamid [2020-04-22 23:29:18,762] multiqc [DEBUG ] No samples found: mirtrace [2020-04-22 23:29:18,813] multiqc [DEBUG ] No samples found: happy [2020-04-22 23:29:18,907] multiqc [DEBUG ] No samples found: homer [2020-04-22 23:29:18,936] multiqc [DEBUG ] No samples found: macs2 [2020-04-22 23:29:18,965] multiqc [DEBUG ] No samples found: theta2 [2020-04-22 23:29:19,014] multiqc [DEBUG ] No samples found: snpeff [2020-04-22 23:29:19,140] multiqc [DEBUG ] No samples found: gatk [2020-04-22 23:29:19,164] multiqc [DEBUG ] No samples found: htseq [2020-04-22 23:29:19,234] multiqc [DEBUG ] No samples found: bcftools [2020-04-22 23:29:19,284] multiqc [DEBUG ] No samples found: featureCounts [2020-04-22 23:29:19,351] multiqc [DEBUG ] No samples found: fgbio [2020-04-22 23:29:19,370] multiqc [DEBUG ] No samples found: dedup [2020-04-22 23:29:19,437] multiqc [DEBUG ] No samples found: damageprofiler [2020-04-22 23:29:19,910] multiqc [DEBUG ] No samples found: biobambam2 [2020-04-22 23:29:19,951] multiqc [DEBUG ] No samples found: mtnucratio [2020-04-22 23:29:19,959] multiqc [DEBUG ] No samples found: picard [2020-04-22 23:29:20,021] multiqc [DEBUG ] No samples found: prokka [2020-04-22 23:29:20,074] multiqc [DEBUG ] No samples found: samblaster [2020-04-22 23:29:20,276] multiqc [DEBUG ] No samples found: samtools [2020-04-22 23:29:20,321] multiqc [DEBUG ] No samples found: sexdeterrmine [2020-04-22 23:29:20,362] multiqc [DEBUG ] No samples found: bamtools [2020-04-22 23:29:20,375] multiqc [DEBUG ] No samples found: jellyfish [2020-04-22 23:29:20,477] multiqc [DEBUG ] No samples found: vcftools [2020-04-22 23:29:20,545] multiqc [DEBUG ] No samples found: longranger [2020-04-22 23:29:20,611] multiqc [DEBUG ] No samples found: stacks [2020-04-22 23:29:20,891] multiqc [DEBUG ] No samples found: bbmap [2020-04-22 23:29:21,022] multiqc.modules.bismark.bismark [INFO ] Found 4 bismark alignment reports [2020-04-22 23:29:21,026] multiqc.modules.bismark.bismark [INFO ] Found 4 bismark dedup reports [2020-04-22 23:29:21,027] multiqc.modules.bismark.bismark [INFO ] Found 4 bismark methextract reports [2020-04-22 23:29:21,052] multiqc [DEBUG ] No samples found: biscuit [2020-04-22 23:29:21,107] multiqc [DEBUG ] No samples found: hicexplorer [2020-04-22 23:29:21,138] multiqc [DEBUG ] No samples found: hicup [2020-04-22 23:29:21,170] multiqc [DEBUG ] No samples found: hicpro [2020-04-22 23:29:21,185] multiqc [DEBUG ] No samples found: salmon [2020-04-22 23:29:21,241] multiqc [DEBUG ] No samples found: kallisto [2020-04-22 23:29:21,304] multiqc [DEBUG ] No samples found: slamdunk [2020-04-22 23:29:21,388] multiqc [DEBUG ] No samples found: star [2020-04-22 23:29:21,447] multiqc [DEBUG ] No samples found: hisat2 [2020-04-22 23:29:21,532] multiqc [DEBUG ] No samples found: tophat [2020-04-22 23:29:21,573] multiqc [DEBUG ] No samples found: bowtie2 [2020-04-22 23:29:21,596] multiqc [DEBUG ] No samples found: bowtie1 [2020-04-22 23:29:21,610] multiqc [DEBUG ] No samples found: kat [2020-04-22 23:29:21,643] multiqc [DEBUG ] No samples found: leehom [2020-04-22 23:29:21,678] multiqc [DEBUG ] No samples found: adapterRemoval [2020-04-22 23:29:21,690] multiqc [DEBUG ] No samples found: clipandmerge [2020-04-22 23:29:21,763] multiqc.modules.cutadapt.cutadapt [INFO ] Found 8 reports [2020-04-22 23:29:21,787] multiqc [DEBUG ] No samples found: flexbar [2020-04-22 23:29:21,820] multiqc [DEBUG ] No samples found: trimmomatic [2020-04-22 23:29:21,842] multiqc [DEBUG ] No samples found: skewer [2020-04-22 23:29:21,873] multiqc [DEBUG ] No samples found: sortmerna [2020-04-22 23:29:21,936] multiqc [DEBUG ] No samples found: biobloomtools [2020-04-22 23:29:21,961] multiqc [DEBUG ] No samples found: fastq_screen [2020-04-22 23:29:22,007] multiqc [DEBUG ] No samples found: afterqc [2020-04-22 23:29:22,044] multiqc [DEBUG ] No samples found: fastp [2020-04-22 23:29:22,856] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '16C_26psu_3_S15_L001_R2_001_val_2_fastqc.zip' as already parsed '16C_26psu_3_S15_L001_R2_001_val_2' [2020-04-22 23:29:22,856] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '16C_26psu_4_S16_L002_R1_001_val_1_fastqc.zip' as already parsed '16C_26psu_4_S16_L002_R1_001_val_1' [2020-04-22 23:29:22,856] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '16C_26psu_3_S15_L001_R1_001_val_1_fastqc.zip' as already parsed '16C_26psu_3_S15_L001_R1_001_val_1' [2020-04-22 23:29:22,856] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'CTRL_8C_26psu_1_S17_L001_R1_001_val_1_fastqc.zip' as already parsed 'CTRL_8C_26psu_1_S17_L001_R1_001_val_1' [2020-04-22 23:29:22,856] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '8C_26psu_3_S11_L001_R2_001_val_2_fastqc.zip' as already parsed '8C_26psu_3_S11_L001_R2_001_val_2' [2020-04-22 23:29:22,856] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '8C_26psu_3_S11_L001_R1_001_val_1_fastqc.zip' as already parsed '8C_26psu_3_S11_L001_R1_001_val_1' [2020-04-22 23:29:22,857] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping '16C_26psu_4_S16_L002_R2_001_val_2_fastqc.zip' as already parsed '16C_26psu_4_S16_L002_R2_001_val_2' [2020-04-22 23:29:22,857] multiqc.modules.fastqc.fastqc [DEBUG ] Skipping 'CTRL_8C_26psu_1_S17_L001_R2_001_val_2_fastqc.zip' as already parsed 'CTRL_8C_26psu_1_S17_L001_R2_001_val_2' [2020-04-22 23:29:22,857] multiqc.modules.fastqc.fastqc [INFO ] Found 8 reports [2020-04-22 23:29:23,042] multiqc [DEBUG ] No samples found: minionqc [2020-04-22 23:29:23,084] multiqc [DEBUG ] No samples found: mosdepth [2020-04-22 23:29:23,119] multiqc [DEBUG ] No samples found: clusterflow [2020-04-22 23:29:23,172] multiqc [DEBUG ] No samples found: bcl2fastq [2020-04-22 23:29:23,214] multiqc [DEBUG ] No samples found: interop [2020-04-22 23:29:23,249] multiqc [DEBUG ] No samples found: flash [2020-04-22 23:29:23,306] multiqc [DEBUG ] No samples found: seqyclean [2020-04-22 23:29:23,336] multiqc [INFO ] Compressing plot data [2020-04-22 23:29:23,518] multiqc [INFO ] Report : TG_PE_Aligned/multiqc_report.html [2020-04-22 23:29:23,518] multiqc [INFO ] Data : TG_PE_Aligned/multiqc_data [2020-04-22 23:29:23,519] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,520] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_bismark_alignment.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,521] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_bismark_dedup.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,521] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_bismark_methextract.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,522] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_cutadapt.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,523] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_fastqc.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,524] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_general_stats.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,524] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_sources.txt' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:23,525] multiqc [DEBUG ] Moving data file from '/tmp/tmpb6oitfxc/multiqc_data/multiqc_data.json' to '/gscratch/scrubbed/strigg/analyses/20200422/TG_PE_Aligned/multiqc_data' [2020-04-22 23:29:24,748] multiqc [INFO ] MultiQC complete