Sequence pairs analysed in total: 44133837 Number of paired-end alignments with a unique best hit: 21575808 Mapping efficiency: 48.9% Sequence pairs with no alignments under any condition: 16272400 Sequence pairs did not map uniquely: 6285629 Sequence pairs which were discarded because genomic sequence could not be extracted: 6 C methylated in CpG context: 75.4% C methylated in CHG context: 1.2% C methylated in CHH context: 2.3% C methylated in unknown context (CN or CHN): 27.7% Sequence pairs analysed in total: 34354958 Number of paired-end alignments with a unique best hit: 17189300 Mapping efficiency: 50.0% Sequence pairs with no alignments under any condition: 12268288 Sequence pairs did not map uniquely: 4897370 Sequence pairs which were discarded because genomic sequence could not be extracted: 6 C methylated in CpG context: 76.3% C methylated in CHG context: 1.2% C methylated in CHH context: 2.6% C methylated in unknown context (CN or CHN): 28.3% Sequence pairs analysed in total: 29194972 Number of paired-end alignments with a unique best hit: 14795493 Mapping efficiency: 50.7% Sequence pairs with no alignments under any condition: 10215196 Sequence pairs did not map uniquely: 4184283 Sequence pairs which were discarded because genomic sequence could not be extracted: 5 C methylated in CpG context: 76.6% C methylated in CHG context: 1.2% C methylated in CHH context: 4.9% C methylated in unknown context (CN or CHN): 27.3% Sequence pairs analysed in total: 34400085 Number of paired-end alignments with a unique best hit: 17134775 Mapping efficiency: 49.8% Sequence pairs with no alignments under any condition: 12100610 Sequence pairs did not map uniquely: 5164700 Sequence pairs which were discarded because genomic sequence could not be extracted: 5 C methylated in CpG context: 76.5% C methylated in CHG context: 1.2% C methylated in CHH context: 2.8% C methylated in unknown context (CN or CHN): 26.8% Sequence pairs analysed in total: 39102702 Number of paired-end alignments with a unique best hit: 19691598 Mapping efficiency: 50.4% Sequence pairs with no alignments under any condition: 12987429 Sequence pairs did not map uniquely: 6423675 Sequence pairs which were discarded because genomic sequence could not be extracted: 8 C methylated in CpG context: 76.3% C methylated in CHG context: 1.3% C methylated in CHH context: 2.6% C methylated in unknown context (CN or CHN): 29.0% Sequence pairs analysed in total: 35355537 Number of paired-end alignments with a unique best hit: 19214938 Mapping efficiency: 54.3% Sequence pairs with no alignments under any condition: 10523533 Sequence pairs did not map uniquely: 5617066 Sequence pairs which were discarded because genomic sequence could not be extracted: 13 C methylated in CpG context: 75.3% C methylated in CHG context: 1.3% C methylated in CHH context: 3.0% C methylated in unknown context (CN or CHN): 31.7% Sequence pairs analysed in total: 27293279 Number of paired-end alignments with a unique best hit: 14295145 Mapping efficiency: 52.4% Sequence pairs with no alignments under any condition: 8338756 Sequence pairs did not map uniquely: 4659378 Sequence pairs which were discarded because genomic sequence could not be extracted: 3 C methylated in CpG context: 75.9% C methylated in CHG context: 1.3% C methylated in CHH context: 3.0% C methylated in unknown context (CN or CHN): 31.0% Sequence pairs analysed in total: 31260279 Number of paired-end alignments with a unique best hit: 15610585 Mapping efficiency: 49.9% Sequence pairs with no alignments under any condition: 12169059 Sequence pairs did not map uniquely: 3480635 Sequence pairs which were discarded because genomic sequence could not be extracted: 6 C methylated in CpG context: 75.6% C methylated in CHG context: 1.2% C methylated in CHH context: 2.0% C methylated in unknown context (CN or CHN): 27.2% Sequence pairs analysed in total: 36162144 Number of paired-end alignments with a unique best hit: 17929201 Mapping efficiency: 49.6% Sequence pairs with no alignments under any condition: 13241106 Sequence pairs did not map uniquely: 4991837 Sequence pairs which were discarded because genomic sequence could not be extracted: 14 C methylated in CpG context: 76.2% C methylated in CHG context: 1.3% C methylated in CHH context: 2.5% C methylated in unknown context (CN or CHN): 27.6% Sequence pairs analysed in total: 36787094 Number of paired-end alignments with a unique best hit: 19498570 Mapping efficiency: 53.0% Sequence pairs with no alignments under any condition: 11691438 Sequence pairs did not map uniquely: 5597086 Sequence pairs which were discarded because genomic sequence could not be extracted: 8 C methylated in CpG context: 75.9% C methylated in CHG context: 1.2% C methylated in CHH context: 2.2% C methylated in unknown context (CN or CHN): 27.9% Sequence pairs analysed in total: 34321341 Number of paired-end alignments with a unique best hit: 17826817 Mapping efficiency: 51.9% Sequence pairs with no alignments under any condition: 10476173 Sequence pairs did not map uniquely: 6018351 Sequence pairs which were discarded because genomic sequence could not be extracted: 4 C methylated in CpG context: 76.7% C methylated in CHG context: 1.3% C methylated in CHH context: 2.8% C methylated in unknown context (CN or CHN): 30.3% Sequence pairs analysed in total: 25000854 Number of paired-end alignments with a unique best hit: 12778756 Mapping efficiency: 51.1% Sequence pairs with no alignments under any condition: 8760551 Sequence pairs did not map uniquely: 3461547 Sequence pairs which were discarded because genomic sequence could not be extracted: 5 C methylated in CpG context: 75.2% C methylated in CHG context: 1.2% C methylated in CHH context: 3.5% C methylated in unknown context (CN or CHN): 25.9% Sequence pairs analysed in total: 27906731 Number of paired-end alignments with a unique best hit: 14328936 Mapping efficiency: 51.3% Sequence pairs with no alignments under any condition: 8105725 Sequence pairs did not map uniquely: 5472070 Sequence pairs which were discarded because genomic sequence could not be extracted: 8 C methylated in CpG context: 75.9% C methylated in CHG context: 1.3% C methylated in CHH context: 2.9% C methylated in unknown context (CN or CHN): 29.9% Sequence pairs analysed in total: 25763427 Number of paired-end alignments with a unique best hit: 12952124 Mapping efficiency: 50.3% Sequence pairs with no alignments under any condition: 9084939 Sequence pairs did not map uniquely: 3726364 Sequence pairs which were discarded because genomic sequence could not be extracted: 6 C methylated in CpG context: 75.4% C methylated in CHG context: 1.2% C methylated in CHH context: 2.3% C methylated in unknown context (CN or CHN): 27.4% Sequence pairs analysed in total: 28232841 Number of paired-end alignments with a unique best hit: 14341624 Mapping efficiency: 50.8% Sequence pairs with no alignments under any condition: 9156060 Sequence pairs did not map uniquely: 4735157 Sequence pairs which were discarded because genomic sequence could not be extracted: 4 C methylated in CpG context: 75.2% C methylated in CHG context: 1.2% C methylated in CHH context: 2.6% C methylated in unknown context (CN or CHN): 28.2% Sequence pairs analysed in total: 29264212 Number of paired-end alignments with a unique best hit: 14301046 Mapping efficiency: 48.9% Sequence pairs with no alignments under any condition: 11207978 Sequence pairs did not map uniquely: 3755188 Sequence pairs which were discarded because genomic sequence could not be extracted: 6 C methylated in CpG context: 74.4% C methylated in CHG context: 1.2% C methylated in CHH context: 1.9% C methylated in unknown context (CN or CHN): 28.1% Sequence pairs analysed in total: 37009583 Number of paired-end alignments with a unique best hit: 17450314 Mapping efficiency: 47.2% Sequence pairs with no alignments under any condition: 14413191 Sequence pairs did not map uniquely: 5146078 Sequence pairs which were discarded because genomic sequence could not be extracted: 3 C methylated in CpG context: 76.9% C methylated in CHG context: 1.3% C methylated in CHH context: 2.2% C methylated in unknown context (CN or CHN): 27.4% Sequence pairs analysed in total: 26786269 Number of paired-end alignments with a unique best hit: 12858057 Mapping efficiency: 48.0% Sequence pairs with no alignments under any condition: 9690132 Sequence pairs did not map uniquely: 4238080 Sequence pairs which were discarded because genomic sequence could not be extracted: 5 C methylated in CpG context: 77.3% C methylated in CHG context: 1.7% C methylated in CHH context: 2.8% C methylated in unknown context (CN or CHN): 31.7% Sequence pairs analysed in total: 27337452 Number of paired-end alignments with a unique best hit: 14375737 Mapping efficiency: 52.6% Sequence pairs with no alignments under any condition: 9191257 Sequence pairs did not map uniquely: 3770458 Sequence pairs which were discarded because genomic sequence could not be extracted: 13 C methylated in CpG context: 76.2% C methylated in CHG context: 1.1% C methylated in CHH context: 1.9% C methylated in unknown context (CN or CHN): 25.8% Sequence pairs analysed in total: 33821539 Number of paired-end alignments with a unique best hit: 17301717 Mapping efficiency: 51.2% Sequence pairs with no alignments under any condition: 9594808 Sequence pairs did not map uniquely: 6925014 Sequence pairs which were discarded because genomic sequence could not be extracted: 2 C methylated in CpG context: 77.3% C methylated in CHG context: 1.3% C methylated in CHH context: 3.6% C methylated in unknown context (CN or CHN): 29.7%