File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs 16C_26psu_1_S13_R1_001_val_1_bismark_bt2_pe.bam 44133837 21575808 16272400 6285629 6 942816382 70456126 23036552 2900590 234618921 14160894 597643299 16C_26psu_2_S14_R1_001_val_1_bismark_bt2_pe.bam 34354958 17189300 12268288 4897370 6 752835717 55344843 17178938 2267266 187219912 12548155 478276603 16C_26psu_3_S15_R1_001_val_1_bismark_bt2_pe.bam 29194972 14795493 10215196 4184283 5 621883200 41738884 12745175 1945186 159795105 19896009 385762841 16C_26psu_4_S16_R1_001_val_1_bismark_bt2_pe.bam 34400085 17134775 12100610 5164700 5 716561476 53652802 16526603 2137406 179875774 13180382 451188509 16C_32psu_1_S1_R1_001_val_1_bismark_bt2_pe.bam 39102702 19691598 12987429 6423675 8 806679054 62217457 19375443 2615560 200621423 13352468 508496703 16C_32psu_2_S2_R1_001_val_1_bismark_bt2_pe.bam 35355537 19214938 10523533 5617066 13 780751740 57473663 18807017 2604591 195833340 15406275 490626854 16C_32psu_3_S3_R1_001_val_1_bismark_bt2_pe.bam 27293279 14295145 8338756 4659378 3 571107420 43021272 13685478 1936195 145334406 10877078 356252991 16C_32psu_4_S4_R1_001_val_1_bismark_bt2_pe.bam 31260279 15610585 12169059 3480635 6 728888259 49671021 16026258 2042809 175116176 9841929 476190066 8C_26psu_1_S9_R1_001_val_1_bismark_bt2_pe.bam 36162144 17929201 13241106 4991837 14 781428513 57503131 17970105 2541474 195472206 12888965 495052632 8C_26psu_2_S10_R1_001_val_1_bismark_bt2_pe.bam 36787094 19498570 11691438 5597086 8 831491545 61329201 19501607 2478916 207471905 12117680 528592236 8C_26psu_3_S11_R1_001_val_1_bismark_bt2_pe.bam 34321341 17826817 10476173 6018351 4 699554745 57458459 17438274 2409324 180082888 12365811 429799989 8C_26psu_4_S12_R1_001_val_1_bismark_bt2_pe.bam 25000854 12778756 8760551 3461547 5 580782843 33527043 11058173 1758703 144536545 13737287 376165092 8C_32psu_1_S5_R1_001_val_1_bismark_bt2_pe.bam 27906731 14328936 8105725 5472070 8 533652900 45302030 14384489 1842441 138590046 9678797 323855097 8C_32psu_2_S6_R1_001_val_1_bismark_bt2_pe.bam 25763427 12952124 9084939 3726364 6 551458860 41782829 13640310 1632387 138067668 8351461 347984205 8C_32psu_3_S7_R1_001_val_1_bismark_bt2_pe.bam 28232841 14341624 9156060 4735157 4 587216147 44899235 14774290 1781567 148136130 9682363 367942562 8C_32psu_4_S8_R1_001_val_1_bismark_bt2_pe.bam 29264212 14301046 11207978 3755188 6 662550136 47665158 16370939 1979382 159146589 8249082 429138986 CTRL_16C_26psu_1_S19_R1_001_val_1_bismark_bt2_pe.bam 37009583 17450314 14413191 5146078 3 761978144 60296634 18112402 2408601 188637728 11060875 481461904 CTRL_16C_26psu_2_S21_R1_001_val_1_bismark_bt2_pe.bam 26786269 12858057 9690132 4238080 5 513006152 45390037 13353405 2243211 131475715 8974383 311569401 CTRL_8C_26psu_1_S17_R1_001_val_1_bismark_bt2_pe.bam 27337452 14375737 9191257 3770458 13 618876711 42291581 13236613 1659507 147183765 8076072 406429173 CTRL_8C_26psu_2_S18_R1_001_val_1_bismark_bt2_pe.bam 33821539 17301717 9594808 6925014 2 630660029 54547657 16004621 2182672 163470725 14272376 380181978