/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_2_S18_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_2_S18_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
33821539
Paired-end alignments with a unique best hit
17301717
Pairs without alignments under any condition
9594808
Pairs that did not map uniquely
6925014
Genomic sequence context not extractable (edges of chromosomes)
2
Cytosine Methylation
Total C's analysed
630660029
Methylated C's in CpG context
54547657
Methylated C's in CHG context
2182672
Methylated C's in CHH context
14272376
Methylated C's in Unknown context
814155
Unmethylated C's in CpG context
16004621
Unmethylated C's in CHG context
163470725
Unmethylated C's in CHH context
380181978
Unmethylated C's in Unknown context
1923550
Percentage methylation (CpG context)
77.3%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
3.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4385617
original top strand
CTOT
4244980
complementary to original top strand
CTOB
4255852
complementary to original bottom strand
OB
4415266
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions