Summary
Globals
| Reference size | 2,240,221,656 |
| Number of reads | 34,603,430 |
| Mapped reads | 34,603,430 / 100% |
| Unmapped reads | 0 / 0% |
| Mapped paired reads | 34,603,430 / 100% |
| Mapped reads, first in pair | 17,301,715 / 50% |
| Mapped reads, second in pair | 17,301,715 / 50% |
| Mapped reads, both in pair | 34,603,430 / 100% |
| Mapped reads, singletons | 0 / 0% |
| Read min/max/mean length | 20 / 145 / 91.18 |
| Duplicated reads (estimated) | 12,470,956 / 36.04% |
| Duplication rate | 28.52% |
| Clipped reads | 0 / 0% |
ACGT Content
| Number/percentage of A's | 1,109,818,749 / 35.39% |
| Number/percentage of C's | 458,267,483 / 14.61% |
| Number/percentage of T's | 1,109,074,766 / 35.37% |
| Number/percentage of G's | 458,442,792 / 14.62% |
| Number/percentage of N's | 18,310 / 0% |
| GC Percentage | 29.24% |
Coverage
| Mean | 1.4032 |
| Standard Deviation | 12.8932 |
Mapping Quality
| Mean Mapping Quality | 23.57 |
Insert size
| Mean | 100.63 |
| Standard Deviation | 44.53 |
| P25/Median/P75 | 71 / 92 / 121 |
Mismatches and indels
| General error rate | 20.52% |
| Mismatches | 624,416,330 |
| Insertions | 6,851,107 |
| Mapped reads with at least one insertion | 14.7% |
| Deletions | 4,872,532 |
| Mapped reads with at least one deletion | 12.25% |
| Homopolymer indels | 43.13% |
Chromosome stats
| Name | Length | Mapped bases | Mean coverage | Standard deviation |
| NC_027300.1 | 159038749 | 230096766 | 1.4468 | 8.1271 |
| NC_027301.1 | 72943711 | 96991323 | 1.3297 | 6.9914 |
| NC_027302.1 | 92503428 | 124046747 | 1.341 | 5.4812 |
| NC_027303.1 | 82398023 | 116256271 | 1.4109 | 9.8079 |
| NC_027304.1 | 80503876 | 109307513 | 1.3578 | 8.3046 |
| NC_027305.1 | 87043187 | 115013011 | 1.3213 | 10.4506 |
| NC_027306.1 | 58785265 | 82261828 | 1.3994 | 9.0169 |
| NC_027307.1 | 26434011 | 36865301 | 1.3946 | 12.5956 |
| NC_027308.1 | 141712163 | 197116301 | 1.391 | 7.6063 |
| NC_027309.1 | 116138521 | 171457762 | 1.4763 | 19.942 |
| NC_027310.1 | 93888508 | 127674516 | 1.3599 | 6.8874 |
| NC_027311.1 | 91880962 | 129233937 | 1.4065 | 9.4773 |
| NC_027312.1 | 107758822 | 153734108 | 1.4266 | 6.8814 |
| NC_027313.1 | 93901823 | 132450845 | 1.4105 | 12.4798 |
| NC_027314.1 | 103963436 | 142677306 | 1.3724 | 6.1227 |
| NC_027315.1 | 87796322 | 125720396 | 1.432 | 10.7642 |
| NC_027316.1 | 57682537 | 77712902 | 1.3473 | 9.1408 |
| NC_027317.1 | 70695409 | 102620669 | 1.4516 | 10.8815 |
| NC_027318.1 | 82978132 | 120775022 | 1.4555 | 35.2581 |
| NC_027319.1 | 86795997 | 121240674 | 1.3968 | 6.8037 |
| NC_027320.1 | 58021487 | 78086497 | 1.3458 | 5.195 |
| NC_027321.1 | 63420196 | 96056816 | 1.5146 | 26.8833 |
| NC_027322.1 | 49854004 | 70952225 | 1.4232 | 7.9545 |
| NC_027323.1 | 48650976 | 63403380 | 1.3032 | 6.3116 |
| NC_027324.1 | 51481326 | 71935108 | 1.3973 | 7.4578 |
| NC_027325.1 | 47900953 | 61724586 | 1.2886 | 7.4748 |
| NC_027326.1 | 43943985 | 62661431 | 1.4259 | 9.3546 |
| NC_027327.1 | 39600944 | 57901130 | 1.4621 | 13.1686 |
| NC_027328.1 | 42488238 | 54999038 | 1.2945 | 9.0841 |
| NC_001960.1 | 16665 | 12607080 | 756.5005 | 1,112.5387 |
