/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_1_S17_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_1_S17_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
27337452
Paired-end alignments with a unique best hit
14375737
Pairs without alignments under any condition
9191257
Pairs that did not map uniquely
3770458
Genomic sequence context not extractable (edges of chromosomes)
13
Cytosine Methylation
Total C's analysed
618876711
Methylated C's in CpG context
42291581
Methylated C's in CHG context
1659507
Methylated C's in CHH context
8076072
Methylated C's in Unknown context
625196
Unmethylated C's in CpG context
13236613
Unmethylated C's in CHG context
147183765
Unmethylated C's in CHH context
406429173
Unmethylated C's in Unknown context
1795657
Percentage methylation (CpG context)
76.2%
Percentage methylation (CHG context)
1.1%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3625613
original top strand
CTOT
3532600
complementary to original top strand
CTOB
3557472
complementary to original bottom strand
OB
3660039
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions