/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_16C_26psu_2_S21_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_16C_26psu_2_S21_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
26786269
Paired-end alignments with a unique best hit
12858057
Pairs without alignments under any condition
9690132
Pairs that did not map uniquely
4238080
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
513006152
Methylated C's in CpG context
45390037
Methylated C's in CHG context
2243211
Methylated C's in CHH context
8974383
Methylated C's in Unknown context
979368
Unmethylated C's in CpG context
13353405
Unmethylated C's in CHG context
131475715
Unmethylated C's in CHH context
311569401
Unmethylated C's in Unknown context
2112980
Percentage methylation (CpG context)
77.3%
Percentage methylation (CHG context)
1.7%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3417874
original top strand
CTOT
2969413
complementary to original top strand
CTOB
3007443
complementary to original bottom strand
OB
3463322
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions