/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_16C_26psu_1_S19_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_16C_26psu_1_S19_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
37009583
Paired-end alignments with a unique best hit
17450314
Pairs without alignments under any condition
14413191
Pairs that did not map uniquely
5146078
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
761978144
Methylated C's in CpG context
60296634
Methylated C's in CHG context
2408601
Methylated C's in CHH context
11060875
Methylated C's in Unknown context
1061120
Unmethylated C's in CpG context
18112402
Unmethylated C's in CHG context
188637728
Unmethylated C's in CHH context
481461904
Unmethylated C's in Unknown context
2809989
Percentage methylation (CpG context)
76.9%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4394918
original top strand
CTOT
4302554
complementary to original top strand
CTOB
4327540
complementary to original bottom strand
OB
4425299
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions