/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_4_S8_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_4_S8_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
29264212
Paired-end alignments with a unique best hit
14301046
Pairs without alignments under any condition
11207978
Pairs that did not map uniquely
3755188
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
662550136
Methylated C's in CpG context
47665158
Methylated C's in CHG context
1979382
Methylated C's in CHH context
8249082
Methylated C's in Unknown context
984377
Unmethylated C's in CpG context
16370939
Unmethylated C's in CHG context
159146589
Unmethylated C's in CHH context
429138986
Unmethylated C's in Unknown context
2515496
Percentage methylation (CpG context)
74.4%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3558111
original top strand
CTOT
3558703
complementary to original top strand
CTOB
3594012
complementary to original bottom strand
OB
3590214
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions