/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_3_S7_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_3_S7_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
28232841
Paired-end alignments with a unique best hit
14341624
Pairs without alignments under any condition
9156060
Pairs that did not map uniquely
4735157
Genomic sequence context not extractable (edges of chromosomes)
4
Cytosine Methylation
Total C's analysed
587216147
Methylated C's in CpG context
44899235
Methylated C's in CHG context
1781567
Methylated C's in CHH context
9682363
Methylated C's in Unknown context
747248
Unmethylated C's in CpG context
14774290
Unmethylated C's in CHG context
148136130
Unmethylated C's in CHH context
367942562
Unmethylated C's in Unknown context
1901503
Percentage methylation (CpG context)
75.2%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3676893
original top strand
CTOT
3467415
complementary to original top strand
CTOB
3486506
complementary to original bottom strand
OB
3710806
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions