/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_2_S6_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_2_S6_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
25763427
Paired-end alignments with a unique best hit
12952124
Pairs without alignments under any condition
9084939
Pairs that did not map uniquely
3726364
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
551458860
Methylated C's in CpG context
41782829
Methylated C's in CHG context
1632387
Methylated C's in CHH context
8351461
Methylated C's in Unknown context
693554
Unmethylated C's in CpG context
13640310
Unmethylated C's in CHG context
138067668
Unmethylated C's in CHH context
347984205
Unmethylated C's in Unknown context
1833359
Percentage methylation (CpG context)
75.4%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3272941
original top strand
CTOT
3177554
complementary to original top strand
CTOB
3202466
complementary to original bottom strand
OB
3299157
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions