/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_1_S5_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_1_S5_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
27906731
Paired-end alignments with a unique best hit
14328936
Pairs without alignments under any condition
8105725
Pairs that did not map uniquely
5472070
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
533652900
Methylated C's in CpG context
45302030
Methylated C's in CHG context
1842441
Methylated C's in CHH context
9678797
Methylated C's in Unknown context
728887
Unmethylated C's in CpG context
14384489
Unmethylated C's in CHG context
138590046
Unmethylated C's in CHH context
323855097
Unmethylated C's in Unknown context
1711412
Percentage methylation (CpG context)
75.9%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3689469
original top strand
CTOT
3441065
complementary to original top strand
CTOB
3471533
complementary to original bottom strand
OB
3726861
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions