Bismark

Bismark Processing Report

/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_1_S5_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_1_S5_R2_001_val_2.fq.gz

Data processed at 16:20 on 2019-09-06


Alignment

Sequence pairs analysed in total 27906731
Paired-end alignments with a unique best hit 14328936
Pairs without alignments under any condition 8105725
Pairs that did not map uniquely 5472070
Genomic sequence context not extractable (edges of chromosomes) 8

Cytosine Methylation

Total C's analysed 533652900
Methylated C's in CpG context 45302030
Methylated C's in CHG context 1842441
Methylated C's in CHH context 9678797
Methylated C's in Unknown context 728887
Unmethylated C's in CpG context 14384489
Unmethylated C's in CHG context 138590046
Unmethylated C's in CHH context 323855097
Unmethylated C's in Unknown context 1711412
Percentage methylation (CpG context) 75.9%
Percentage methylation (CHG context) 1.3%
Percentage methylation (CHH context) 2.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3689469 original top strand
CTOT 3441065 complementary to original top strand
CTOB 3471533 complementary to original bottom strand
OB 3726861 original bottom strand