/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_3_S11_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_3_S11_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
34321341
Paired-end alignments with a unique best hit
17826817
Pairs without alignments under any condition
10476173
Pairs that did not map uniquely
6018351
Genomic sequence context not extractable (edges of chromosomes)
4
Cytosine Methylation
Total C's analysed
699554745
Methylated C's in CpG context
57458459
Methylated C's in CHG context
2409324
Methylated C's in CHH context
12365811
Methylated C's in Unknown context
1016891
Unmethylated C's in CpG context
17438274
Unmethylated C's in CHG context
180082888
Unmethylated C's in CHH context
429799989
Unmethylated C's in Unknown context
2334206
Percentage methylation (CpG context)
76.7%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4624932
original top strand
CTOT
4245017
complementary to original top strand
CTOB
4285424
complementary to original bottom strand
OB
4671440
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions