/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_2_S10_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_2_S10_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
36787094
Paired-end alignments with a unique best hit
19498570
Pairs without alignments under any condition
11691438
Pairs that did not map uniquely
5597086
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
831491545
Methylated C's in CpG context
61329201
Methylated C's in CHG context
2478916
Methylated C's in CHH context
12117680
Methylated C's in Unknown context
972277
Unmethylated C's in CpG context
19501607
Unmethylated C's in CHG context
207471905
Unmethylated C's in CHH context
528592236
Unmethylated C's in Unknown context
2509800
Percentage methylation (CpG context)
75.9%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5043795
original top strand
CTOT
4654368
complementary to original top strand
CTOB
4698213
complementary to original bottom strand
OB
5102186
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions