/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_1_S9_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_1_S9_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
36162144
Paired-end alignments with a unique best hit
17929201
Pairs without alignments under any condition
13241106
Pairs that did not map uniquely
4991837
Genomic sequence context not extractable (edges of chromosomes)
14
Cytosine Methylation
Total C's analysed
781428513
Methylated C's in CpG context
57503131
Methylated C's in CHG context
2541474
Methylated C's in CHH context
12888965
Methylated C's in Unknown context
1015866
Unmethylated C's in CpG context
17970105
Unmethylated C's in CHG context
195472206
Unmethylated C's in CHH context
495052632
Unmethylated C's in Unknown context
2661219
Percentage methylation (CpG context)
76.2%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4485906
original top strand
CTOT
4446331
complementary to original top strand
CTOB
4474901
complementary to original bottom strand
OB
4522049
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions