/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_3_S3_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_3_S3_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
27293279
Paired-end alignments with a unique best hit
14295145
Pairs without alignments under any condition
8338756
Pairs that did not map uniquely
4659378
Genomic sequence context not extractable (edges of chromosomes)
3
Cytosine Methylation
Total C's analysed
571107420
Methylated C's in CpG context
43021272
Methylated C's in CHG context
1936195
Methylated C's in CHH context
10877078
Methylated C's in Unknown context
804326
Unmethylated C's in CpG context
13685478
Unmethylated C's in CHG context
145334406
Unmethylated C's in CHH context
356252991
Unmethylated C's in Unknown context
1789655
Percentage methylation (CpG context)
75.9%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
3.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3810766
original top strand
CTOT
3310919
complementary to original top strand
CTOB
3334004
complementary to original bottom strand
OB
3839453
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions