/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_2_S2_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_2_S2_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
35355537
Paired-end alignments with a unique best hit
19214938
Pairs without alignments under any condition
10523533
Pairs that did not map uniquely
5617066
Genomic sequence context not extractable (edges of chromosomes)
13
Cytosine Methylation
Total C's analysed
780751740
Methylated C's in CpG context
57473663
Methylated C's in CHG context
2604591
Methylated C's in CHH context
15406275
Methylated C's in Unknown context
1115923
Unmethylated C's in CpG context
18807017
Unmethylated C's in CHG context
195833340
Unmethylated C's in CHH context
490626854
Unmethylated C's in Unknown context
2400815
Percentage methylation (CpG context)
75.3%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
3.0%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5105477
original top strand
CTOT
4447946
complementary to original top strand
CTOB
4495709
complementary to original bottom strand
OB
5165793
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions