/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_1_S1_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_32psu_1_S1_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
39102702
Paired-end alignments with a unique best hit
19691598
Pairs without alignments under any condition
12987429
Pairs that did not map uniquely
6423675
Genomic sequence context not extractable (edges of chromosomes)
8
Cytosine Methylation
Total C's analysed
806679054
Methylated C's in CpG context
62217457
Methylated C's in CHG context
2615560
Methylated C's in CHH context
13352468
Methylated C's in Unknown context
1101328
Unmethylated C's in CpG context
19375443
Unmethylated C's in CHG context
200621423
Unmethylated C's in CHH context
508496703
Unmethylated C's in Unknown context
2697527
Percentage methylation (CpG context)
76.3%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5118401
original top strand
CTOT
4691306
complementary to original top strand
CTOB
4722488
complementary to original bottom strand
OB
5159395
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions