Bismark

Bismark Processing Report

/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_4_S16_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_4_S16_R2_001_val_2.fq.gz

Data processed at 16:20 on 2019-09-06


Alignment

Sequence pairs analysed in total 34400085
Paired-end alignments with a unique best hit 17134775
Pairs without alignments under any condition 12100610
Pairs that did not map uniquely 5164700
Genomic sequence context not extractable (edges of chromosomes) 5

Cytosine Methylation

Total C's analysed 716561476
Methylated C's in CpG context 53652802
Methylated C's in CHG context 2137406
Methylated C's in CHH context 13180382
Methylated C's in Unknown context 832200
Unmethylated C's in CpG context 16526603
Unmethylated C's in CHG context 179875774
Unmethylated C's in CHH context 451188509
Unmethylated C's in Unknown context 2270272
Percentage methylation (CpG context) 76.5%
Percentage methylation (CHG context) 1.2%
Percentage methylation (CHH context) 2.8%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4205837 original top strand
CTOT 4343538 complementary to original top strand
CTOB 4355515 complementary to original bottom strand
OB 4229880 original bottom strand