/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_4_S16_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_4_S16_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
34400085
Paired-end alignments with a unique best hit
17134775
Pairs without alignments under any condition
12100610
Pairs that did not map uniquely
5164700
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
716561476
Methylated C's in CpG context
53652802
Methylated C's in CHG context
2137406
Methylated C's in CHH context
13180382
Methylated C's in Unknown context
832200
Unmethylated C's in CpG context
16526603
Unmethylated C's in CHG context
179875774
Unmethylated C's in CHH context
451188509
Unmethylated C's in Unknown context
2270272
Percentage methylation (CpG context)
76.5%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4205837
original top strand
CTOT
4343538
complementary to original top strand
CTOB
4355515
complementary to original bottom strand
OB
4229880
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions