/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_3_S15_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_3_S15_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
29194972
Paired-end alignments with a unique best hit
14795493
Pairs without alignments under any condition
10215196
Pairs that did not map uniquely
4184283
Genomic sequence context not extractable (edges of chromosomes)
5
Cytosine Methylation
Total C's analysed
621883200
Methylated C's in CpG context
41738884
Methylated C's in CHG context
1945186
Methylated C's in CHH context
19896009
Methylated C's in Unknown context
696548
Unmethylated C's in CpG context
12745175
Unmethylated C's in CHG context
159795105
Unmethylated C's in CHH context
385762841
Unmethylated C's in Unknown context
1853736
Percentage methylation (CpG context)
76.6%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
4.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3559660
original top strand
CTOT
3827142
complementary to original top strand
CTOB
3833510
complementary to original bottom strand
OB
3575176
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions