/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_2_S14_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_2_S14_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
34354958
Paired-end alignments with a unique best hit
17189300
Pairs without alignments under any condition
12268288
Pairs that did not map uniquely
4897370
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
752835717
Methylated C's in CpG context
55344843
Methylated C's in CHG context
2267266
Methylated C's in CHH context
12548155
Methylated C's in Unknown context
974936
Unmethylated C's in CpG context
17178938
Unmethylated C's in CHG context
187219912
Unmethylated C's in CHH context
478276603
Unmethylated C's in Unknown context
2473945
Percentage methylation (CpG context)
76.3%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4365205
original top strand
CTOT
4195722
complementary to original top strand
CTOB
4231609
complementary to original bottom strand
OB
4396758
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions