/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_1_S13_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/16C_26psu_1_S13_R2_001_val_2.fq.gz
Data processed at 16:20 on 2019-09-06
Alignment
Sequence pairs analysed in total
44133837
Paired-end alignments with a unique best hit
21575808
Pairs without alignments under any condition
16272400
Pairs that did not map uniquely
6285629
Genomic sequence context not extractable (edges of chromosomes)
6
Cytosine Methylation
Total C's analysed
942816382
Methylated C's in CpG context
70456126
Methylated C's in CHG context
2900590
Methylated C's in CHH context
14160894
Methylated C's in Unknown context
1242988
Unmethylated C's in CpG context
23036552
Unmethylated C's in CHG context
234618921
Unmethylated C's in CHH context
597643299
Unmethylated C's in Unknown context
3242207
Percentage methylation (CpG context)
75.4%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.3%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5540754
original top strand
CTOT
5203089
complementary to original top strand
CTOB
5247188
complementary to original bottom strand
OB
5584771
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions