/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_2_S18_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_2_S18_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
33821539
Paired-end alignments with a unique best hit
16988832
Pairs without alignments under any condition
8783250
Pairs that did not map uniquely
8049457
Genomic sequence context not extractable (edges of chromosomes)
1752
Cytosine Methylation
Total C's analysed
618666260
Methylated C's in CpG context
53791240
Methylated C's in CHG context
2118015
Methylated C's in CHH context
13486666
Methylated C's in Unknown context
788360
Unmethylated C's in CpG context
15384319
Unmethylated C's in CHG context
160911871
Unmethylated C's in CHH context
372974149
Unmethylated C's in Unknown context
1838115
Percentage methylation (CpG context)
77.8%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
3.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4306768
original top strand
CTOT
4163997
complementary to original top strand
CTOB
4179753
complementary to original bottom strand
OB
4336562
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions