/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_1_S17_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_8C_26psu_1_S17_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
27337452
Paired-end alignments with a unique best hit
14108898
Pairs without alignments under any condition
8473487
Pairs that did not map uniquely
4755067
Genomic sequence context not extractable (edges of chromosomes)
1553
Cytosine Methylation
Total C's analysed
608997350
Methylated C's in CpG context
41710705
Methylated C's in CHG context
1612289
Methylated C's in CHH context
7810217
Methylated C's in Unknown context
616001
Unmethylated C's in CpG context
12734939
Unmethylated C's in CHG context
144806126
Unmethylated C's in CHH context
400323074
Unmethylated C's in Unknown context
1712406
Percentage methylation (CpG context)
76.6%
Percentage methylation (CHG context)
1.1%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3562839
original top strand
CTOT
3468456
complementary to original top strand
CTOB
3489160
complementary to original bottom strand
OB
3586890
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions