/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_16C_26psu_1_S19_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/CTRL_16C_26psu_1_S19_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
37009583
Paired-end alignments with a unique best hit
17164403
Pairs without alignments under any condition
13659097
Pairs that did not map uniquely
6186083
Genomic sequence context not extractable (edges of chromosomes)
1711
Cytosine Methylation
Total C's analysed
749942238
Methylated C's in CpG context
59467598
Methylated C's in CHG context
2353262
Methylated C's in CHH context
10801992
Methylated C's in Unknown context
1049859
Unmethylated C's in CpG context
17432347
Unmethylated C's in CHG context
185992172
Unmethylated C's in CHH context
473894867
Unmethylated C's in Unknown context
2723925
Percentage methylation (CpG context)
77.3%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
2.2%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4326866
original top strand
CTOT
4235051
complementary to original top strand
CTOB
4251872
complementary to original bottom strand
OB
4348903
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions