/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_4_S8_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_4_S8_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
29264212
Paired-end alignments with a unique best hit
14084982
Pairs without alignments under any condition
10598154
Pairs that did not map uniquely
4581076
Genomic sequence context not extractable (edges of chromosomes)
1429
Cytosine Methylation
Total C's analysed
653044712
Methylated C's in CpG context
47026493
Methylated C's in CHG context
1940321
Methylated C's in CHH context
8179862
Methylated C's in Unknown context
980538
Unmethylated C's in CpG context
15830901
Unmethylated C's in CHG context
157094385
Unmethylated C's in CHH context
422972750
Unmethylated C's in Unknown context
2443521
Percentage methylation (CpG context)
74.8%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3506326
original top strand
CTOT
3510550
complementary to original top strand
CTOB
3536275
complementary to original bottom strand
OB
3530402
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions