/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_1_S5_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_32psu_1_S5_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
27906731
Paired-end alignments with a unique best hit
14072066
Pairs without alignments under any condition
7509546
Pairs that did not map uniquely
6325119
Genomic sequence context not extractable (edges of chromosomes)
1403
Cytosine Methylation
Total C's analysed
524069701
Methylated C's in CpG context
44580153
Methylated C's in CHG context
1794653
Methylated C's in CHH context
9364823
Methylated C's in Unknown context
713305
Unmethylated C's in CpG context
13859065
Unmethylated C's in CHG context
136364840
Unmethylated C's in CHH context
318106167
Unmethylated C's in Unknown context
1648842
Percentage methylation (CpG context)
76.3%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3624722
original top strand
CTOT
3379551
complementary to original top strand
CTOB
3407536
complementary to original bottom strand
OB
3658854
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions