/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_4_S12_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_4_S12_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
25000854
Paired-end alignments with a unique best hit
12586654
Pairs without alignments under any condition
7567248
Pairs that did not map uniquely
4846952
Genomic sequence context not extractable (edges of chromosomes)
3102
Cytosine Methylation
Total C's analysed
572587367
Methylated C's in CpG context
33604731
Methylated C's in CHG context
1713978
Methylated C's in CHH context
13430597
Methylated C's in Unknown context
564134
Unmethylated C's in CpG context
10679096
Unmethylated C's in CHG context
142129705
Unmethylated C's in CHH context
371029260
Unmethylated C's in Unknown context
1526405
Percentage methylation (CpG context)
75.9%
Percentage methylation (CHG context)
1.2%
Percentage methylation (CHH context)
3.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3179481
original top strand
CTOT
3097668
complementary to original top strand
CTOB
3111741
complementary to original bottom strand
OB
3194662
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions