/gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_3_S11_R1_001_val_1.fq.gz and /gscratch/scrubbed/strigg/TRIMG_adapt_5bp/TRIM_cat/8C_26psu_3_S11_R2_001_val_2.fq.gz
Data processed at 00:55 on 2019-08-18
Alignment
Sequence pairs analysed in total
34321341
Paired-end alignments with a unique best hit
17531652
Pairs without alignments under any condition
9675023
Pairs that did not map uniquely
7114666
Genomic sequence context not extractable (edges of chromosomes)
1782
Cytosine Methylation
Total C's analysed
687992764
Methylated C's in CpG context
56625818
Methylated C's in CHG context
2350349
Methylated C's in CHH context
12001180
Methylated C's in Unknown context
997880
Unmethylated C's in CpG context
16826693
Unmethylated C's in CHG context
177447140
Unmethylated C's in CHH context
422741584
Unmethylated C's in Unknown context
2249618
Percentage methylation (CpG context)
77.1%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4550197
original top strand
CTOT
4173653
complementary to original top strand
CTOB
4212730
complementary to original bottom strand
OB
4593290
original bottom strand
Deduplication
Alignments analysed
{{seqs_total_duplicates}}
Unique alignments
{{unique_alignments_duplicates}}
Duplicates removed
{{duplicate_alignments_duplicates}}
Duplicated alignments were found at {{different_positions_duplicates}} different positions